Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS08230	BPHYT_RS08235	BPHYT_RS08240	BPHYT_RS08245	BPHYT_RS08250
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-3.9	+0.3	-3.8	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-2.7	-0.1	-3.3	+0.1
carbon source	2-Deoxy-D-Ribose (C)	N.D.	-1.2	+0.0	-4.0	-0.2
carbon source	Xylitol (C)	N.D.	+0.4	+0.1	-5.6	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	-4.3	-0.2	-0.4	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-3.9	-1.2	+0.4	-0.3
carbon source	L-Arabinose (C)	N.D.	+0.6	-0.2	-4.2	-1.1
carbon source	Gly-Glu (C)	N.D.	+0.0	+0.3	-4.5	-0.6
phage	36hr PHYTO4 MOI 1	N.D.	-1.9	-0.1	-0.4	-2.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-1.9	+0.3	-3.2	+0.1
carbon source	Tween 20 (C)	N.D.	-2.9	+0.1	-2.0	+0.1
carbon source	D-Alanine (C)	N.D.	-0.5	+0.0	-3.9	-0.2
carbon source	2-Deoxy-D-Ribose (C)	N.D.	-1.3	+0.2	-3.5	+0.1
tn7 efficiency	Outgrowth after Tn7 transformation	N.D.	-3.2	+0.1	-0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	N.D.	+0.2	+0.3	-4.0	-0.7
carbon source	L-Rhamnose (C)	N.D.	+0.6	-0.5	-3.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-4.0	+0.6	-0.9	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-3.0	+0.1	-1.3	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-3.8	-0.0	+0.3	-0.1
carbon source	D-Xylose (C)	N.D.	+1.4	+0.1	-5.2	+0.0
nitrogen source	D-Alanine (N)	N.D.	-0.5	-0.2	-3.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.3	+0.3	-2.9	+0.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	-0.1	+0.4	-4.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.5	+0.9	-3.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.2	-3.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.6	+1.0	-2.1	+0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	+2.0	-0.1	-2.3	-0.6
carbon source	Disodium Glutarate (C)	N.D.	+1.4	+0.3	-2.7	+0.1
carbon source	D-Glucose (C)	N.D.	+1.7	+0.4	-0.4	-1.8
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+1.8	+0.1	-2.2	+0.6