Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS08170	BPHYT_RS08175	BPHYT_RS08180	BPHYT_RS08185	BPHYT_RS08190
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	N.D.	+0.0	-0.3	-2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	+0.2	-0.9	-1.4
phage	24hr PHYTO9 MOI 10	-0.4	N.D.	-0.1	-0.5	-1.1
carbon source	D-Lactate (C)	-0.3	N.D.	-0.7	-0.8	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.1	N.D.	-0.3	-0.1	-1.7
phage	24hr PHYTO10 MOI 10	-0.8	N.D.	+0.1	-0.1	-1.2
phage	24hr PHYTO11 MOI 1	-1.2	N.D.	-0.7	-0.4	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.3	N.D.	+0.3	-0.2	-1.9
carbon source	D-Glucose 20 mM (C)	-0.6	N.D.	-0.7	+0.6	-0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+1.0	N.D.	-0.3	-0.2	-1.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-1.4	N.D.	+0.4	+0.6	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	N.D.	-0.8	+0.8	-0.3
nitrogen source	Putrescine (N)	+0.8	N.D.	-0.2	-0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	N.D.	-0.3	+1.0	-1.0
phage	24hr PHYTO MOI 0.1	+0.9	N.D.	+0.3	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	N.D.	-0.1	-0.1	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.8	N.D.	+0.1	-0.4	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.2	N.D.	+0.2	+0.6	+1.4
carbon source	L-Fucose (C)	-0.5	N.D.	+0.4	+0.4	+0.9
carbon source	adipate (C)	+0.4	N.D.	-0.5	+0.2	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	N.D.	-0.5	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	N.D.	+0.1	+1.8	-0.5
motility	outer cut, LB soft agar motility assay	+0.7	N.D.	-0.2	-0.2	+1.3
carbon source	2-Deoxy-D-Ribose (C)	+0.5	N.D.	-0.2	+0.6	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.5	N.D.	-0.4	-0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	N.D.	+0.7	+1.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	N.D.	-0.1	+0.2	+1.2
carbon source	Azelaic (C)	+0.5	N.D.	+0.3	+0.2	+1.1
carbon source	D-Xylose (C)	+0.4	N.D.	+0.2	+0.5	+1.1
carbon source	Malonic (C)	-0.4	N.D.	+0.3	+0.5	+2.6