Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS08060 and BPHYT_RS08065 overlap by 4 nucleotidesBPHYT_RS08065 and BPHYT_RS08070 are separated by 93 nucleotidesBPHYT_RS08070 and BPHYT_RS08075 are separated by 215 nucleotidesBPHYT_RS08075 and BPHYT_RS08080 are separated by 94 nucleotides BPHYT_RS08060: BPHYT_RS08060 - ribosome maturation factor RimP, at 1,837,780 to 1,838,238 _RS08060 BPHYT_RS08065: BPHYT_RS08065 - transcription termination factor NusA, at 1,838,235 to 1,839,710 _RS08065 BPHYT_RS08070: BPHYT_RS08070 - translation initiation factor IF-2, at 1,839,804 to 1,842,764 _RS08070 BPHYT_RS08075: BPHYT_RS08075 - ribosome-binding factor A, at 1,842,980 to 1,843,345 _RS08075 BPHYT_RS08080: BPHYT_RS08080 - tRNA pseudouridine synthase B, at 1,843,440 to 1,844,375 _RS08080
Group Condition BPHYT_RS08060 BPHYT_RS08065 BPHYT_RS08070 BPHYT_RS08075 BPHYT_RS08080
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -5.1 N.D. N.D. N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.9 N.D. N.D. N.D. -0.4
nitrogen source D-Alanine (N) -2.5 N.D. N.D. N.D. -0.0
motility outer cut, LB soft agar motility assay -2.4 N.D. N.D. N.D. +0.0
stress A22 0.005 mg/ml -2.3 N.D. N.D. N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.0 N.D. N.D. N.D. -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.8 N.D. N.D. N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.6 N.D. N.D. N.D. -0.2
carbon source Protocatechuic Acid (C) -1.6 N.D. N.D. N.D. -0.2
phage PHYTO3 MOI 0.1 -1.0 N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 N.D. N.D. N.D. -0.8
carbon source Sebacic (C) -1.3 N.D. N.D. N.D. -0.3
carbon source D-Glucose (C) -1.1 N.D. N.D. N.D. -0.5
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.7 N.D. N.D. N.D. -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.4 N.D. N.D. N.D. -0.2
carbon source Dodecandioic (C) -1.1 N.D. N.D. N.D. -0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. N.D. N.D. -0.7
phage 24hr PHYTO3 MOI 10 -1.0 N.D. N.D. N.D. -0.5
motility inner cut, LB soft agar motility assay -1.4 N.D. N.D. N.D. +0.1
carbon source Phenylacetic 5 mM (C) -1.4 N.D. N.D. N.D. +0.1
carbon source Suberic (C) -1.3 N.D. N.D. N.D. +0.3
motility outer cut, LB soft agar motility assay -1.3 N.D. N.D. N.D. +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.1 N.D. N.D. N.D. -0.9
phage 24hr PHYTO4 MOI 10 +1.2 N.D. N.D. N.D. -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +1.0 N.D. N.D. N.D. -0.5
phage 36hr PHYTO8 MOI 10 -0.4 N.D. N.D. N.D. +1.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +1.2 N.D. N.D. N.D. -0.6
stress Paraquat dichloride 0.064 mg/ml -0.1 N.D. N.D. N.D. +1.9
stress Benzethonium chloride 0.0016 mM +1.8 N.D. N.D. N.D. +0.1
stress Lomefloxacin 0.001 mM +2.3 N.D. N.D. N.D. -0.3
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