Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS07855 and BPHYT_RS07860 overlap by 4 nucleotidesBPHYT_RS07860 and BPHYT_RS07865 are separated by 38 nucleotidesBPHYT_RS07865 and BPHYT_RS07870 overlap by 4 nucleotidesBPHYT_RS07870 and BPHYT_RS07875 are separated by 96 nucleotides BPHYT_RS07855: BPHYT_RS07855 - benzoate 1,2-dioxygenase subunit alpha, at 1,789,628 to 1,790,986 _RS07855 BPHYT_RS07860: BPHYT_RS07860 - benzoate 1,2-dioxygenase subunit beta, at 1,790,983 to 1,791,471 _RS07860 BPHYT_RS07865: BPHYT_RS07865 - NADH oxidase, at 1,791,510 to 1,792,532 _RS07865 BPHYT_RS07870: BPHYT_RS07870 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 1,792,529 to 1,793,305 _RS07870 BPHYT_RS07875: BPHYT_RS07875 - CoA transferase, at 1,793,402 to 1,795,393 _RS07875
Group Condition BPHYT_RS07855 BPHYT_RS07860 BPHYT_RS07865 BPHYT_RS07870 BPHYT_RS07875
phage 36hr PHYTO10 MOI 10 -0.8 -2.1 N.D. -0.4 -0.0
phage PHYTO3 MOI 0.1 -0.3 -2.1 N.D. -0.6 -0.1
phage 36hr PHYTO10 MOI 10 -0.4 -1.5 N.D. -1.2 +0.0
phage P. phyto PHYTO2 MOI 0.1 -0.3 -2.0 N.D. +0.1 -0.4
phage 36hr PHYTO6 MOI 10 -0.8 -0.1 N.D. -1.3 -0.2
phage 24hr PHYTO9 MOI 0.1 -0.2 -1.6 N.D. -0.8 +0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.8 N.D. -0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.9 -0.9 N.D. -0.1 -0.2
phage 24hr PHYTO10 MOI 10 -0.9 -0.6 N.D. -0.2 -0.4
phage 36hr PHYTO4 MOI 1 -0.4 -1.2 N.D. -0.5 +0.2
carbon source Phenylacetic 5 mM (C) -0.2 -1.7 N.D. -0.1 +0.0
phage 36hr PHYTO8 MOI 10 -0.3 -1.2 N.D. -0.6 +0.0
phage P. phyto corn MOI 0.1 -1.0 -0.9 N.D. -0.0 +0.1
phage 36hr PHYTO2 MOI 1 -0.5 +0.4 N.D. -1.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -1.1 N.D. -0.8 +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 -0.9 N.D. -0.5 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -1.7 N.D. +0.4 +0.1
nitrogen source L-Isoleucine (N) -0.2 -1.4 N.D. +0.3 +0.2
phage 24hr PHYTO2 MOI 0.1 -0.6 +1.2 N.D. -1.4 -0.1
phage 36hr PHYTO2 MOI 1 -1.1 +1.2 N.D. -0.5 -0.4
phage 24hr PHYTO4 MOI 10 -1.0 +0.9 N.D. -0.7 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -1.2 N.D. +0.9 -0.0
phage 24hr PHYTO1 MOI 1 -0.7 +0.9 N.D. -0.2 -0.3
nophagecontrol 36hr Phyto Lib only -0.6 +0.9 N.D. -0.5 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +1.0 -0.7 N.D. -0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +1.1 -0.4 N.D. -0.8 +0.2
nitrogen source Putrescine (N) -0.1 -0.8 N.D. +1.3 +0.1
nitrogen source L-Serine (N) -0.7 +0.9 N.D. +0.6 +0.1
phage 36hr PHYTO8 MOI 0.1 -0.3 +1.7 N.D. -0.2 +0.1
phage 36hr PHYTO7 MOI 1 +0.6 +1.2 N.D. +0.1 +0.2
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