Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS07780 and BPHYT_RS07785 are separated by 3 nucleotidesBPHYT_RS07785 and BPHYT_RS07790 are separated by 18 nucleotidesBPHYT_RS07790 and BPHYT_RS07795 are separated by 367 nucleotidesBPHYT_RS07795 and BPHYT_RS07800 are separated by 525 nucleotides BPHYT_RS07780: BPHYT_RS07780 - nodulation protein, at 1,771,171 to 1,774,494 _RS07780 BPHYT_RS07785: BPHYT_RS07785 - multidrug transporter, at 1,774,498 to 1,777,632 _RS07785 BPHYT_RS07790: BPHYT_RS07790 - RND transporter MFP subunit, at 1,777,651 to 1,779,060 _RS07790 BPHYT_RS07795: BPHYT_RS07795 - IclR family transcriptional regulator, at 1,779,428 to 1,780,264 _RS07795 BPHYT_RS07800: BPHYT_RS07800 - transposase, at 1,780,790 to 1,781,092 _RS07800
Group Condition BPHYT_RS07780 BPHYT_RS07785 BPHYT_RS07790 BPHYT_RS07795 BPHYT_RS07800
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.2 -0.2 +0.0 -1.5 N.D.
carbon source pyruvate (C) -0.3 -0.2 -0.5 -0.4 N.D.
carbon source D-Glucose (C) -0.2 -0.3 -0.5 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.3 -0.1 -1.0 N.D.
nitrogen source L-Lysine (N) -0.4 -0.0 +0.3 -0.6 N.D.
phage 24hr PHYTO10 MOI 10 +0.1 +0.1 +0.2 -1.1 N.D.
phage P. phyto PHYTO2 MOI 1 +0.1 -0.0 +0.5 -1.0 N.D.
phage 24hr PHYTO3 MOI 10 +0.3 +0.4 -0.1 -0.9 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.3 -0.4 +0.2 +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.1 -0.2 -0.8 +0.9 N.D.
stress Cephalothin 2 mg/ml -0.3 -0.3 -0.2 +0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.1 -0.1 -0.5 +0.6 N.D.
phage 36hr PHYTO2 MOI 0.1 +0.2 +0.2 +0.4 -0.7 N.D.
phage 24hr PHYTO3 MOI 10 -0.0 +0.2 -0.6 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.3 +0.3 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -0.1 -0.2 +0.9 N.D.
phage 36hr PHYTO4 MOI 1 +0.3 +0.3 +0.5 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +0.0 -0.2 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.4 +0.1 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.2 -0.1 +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.1 +0.0 +0.9 N.D.
phage 36hr PHYTO11 MOI 0.1 +0.1 -0.1 +0.6 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.0 +0.2 +1.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.3 +0.3 -0.1 +0.8 N.D.
phage 24hr PHYTO11 MOI 1 -0.0 +0.2 +0.3 +0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.3 +0.4 +0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 +0.5 +0.5 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 +0.0 +1.6 N.D.
carbon source Phenylacetic 5 mM (C) +0.2 +0.1 +0.1 +1.3 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 +0.6 +0.3 +0.7 N.D.
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