Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS07620	BPHYT_RS07625	BPHYT_RS07630	BPHYT_RS07635	BPHYT_RS07640
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.3	-0.5	-0.3	-0.5	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.0	-0.4	-0.3	-0.5	-0.7
carbon source	Phenylacetic 5 mM (C)	-0.1	-0.2	-0.5	-1.1	+0.1
nitrogen source	L-Serine (N)	-0.3	+0.1	+0.2	-1.1	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.5	-0.3	+0.6	-1.0
nitrogen source	NAG (N)	+0.1	+0.4	-0.4	-1.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.2	-0.8	-0.2	+0.3
phage	24hr PHYTO11 MOI 1	-0.8	+0.0	-0.2	+0.6	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.0	+0.0	-1.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.0	+0.7	-0.4	-1.1
nitrogen source	L-Glutamic (N)	-0.2	+0.2	+0.0	-1.1	+0.5
phage	24hr PHYTO8 MOI 1	-0.4	-0.1	-0.4	+0.8	-0.4
carbon source	D-Glucose (C)	-0.7	-0.1	+0.6	+0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.0	-0.4	+0.8	-0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.2	+0.2	+0.4	-0.6
phage	24hr PHYTO7 MOI 1	+0.2	+0.3	-0.6	+0.7	-0.6
nophagecontrol	36hr Phyto Lib only	-0.1	-0.2	-0.7	+0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.3	-0.1	-0.6	+1.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.7	+0.2	+0.5	-0.1	+0.5
phage	36hr PHYTO3 MOI 1	+0.1	-0.3	-0.4	+0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.2	+0.2	-0.4	+1.0
phage	P. phyto PHYTO2 MOI 1	-0.5	+0.2	+1.1	-1.0	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.1	-0.2	+0.5	+0.9
phage	24hr PHYTO3 MOI 0.1	-0.3	+0.2	+0.5	+0.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.1	+0.3	-0.4	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.0	+0.0	+0.2	+1.2	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	+0.2	+0.4	+0.8	+0.6
phage	36hr PHYTO10 MOI 10	+0.1	+0.1	+0.3	+0.5	+0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.2	+0.3	+0.5	+0.8	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.1	+0.3	+1.6	+0.3