Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS07605	BPHYT_RS07610	BPHYT_RS07615	BPHYT_RS07620	BPHYT_RS07625
nophagecontrol	24hr Phyto Lib only	-3.0	N.D.	+0.2	-0.1	-0.0
phage	36hr PHYTO2 MOI 1	-2.7	N.D.	-0.1	+0.1	-0.1
phage	P. phyto PHYTO2 MOI 1	-1.7	N.D.	+0.1	-0.0	-0.4
stress	Cephalothin 2 mg/ml	-0.7	N.D.	-0.3	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	N.D.	-0.5	-0.3	-0.3
phage	24hr PHYTO3 MOI 10	-0.2	N.D.	-0.4	-0.5	-0.5
motility	inner cut, LB soft agar motility assay	-0.8	N.D.	+0.0	-0.4	-0.3
phage	24hr PHYTO3 MOI 10	-1.1	N.D.	-0.3	-0.2	+0.1
phage	36hr PHYTO4 MOI 1	-1.3	N.D.	+0.2	-0.5	+0.2
carbon source	Sebacic (C)	-1.5	N.D.	+0.2	-0.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	N.D.	+0.5	-0.4	-0.5
motility	outer cut, LB soft agar motility assay	-0.8	N.D.	-0.4	+0.2	-0.2
phage	P. phyto PHYTO2 MOI 1	-0.9	N.D.	+0.0	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	-0.2	-0.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-1.2	N.D.	-0.1	+0.3	+0.1
phage	24hr PHYTO9 MOI 10	-1.4	N.D.	+0.3	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.8	N.D.	-0.0	-0.3	+0.4
phage	24hr PHYTO7 MOI 10	-1.0	N.D.	+0.1	+0.5	-0.0
phage	P. phyto corn MOI 0.1	-1.1	N.D.	+0.4	+0.1	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.9	N.D.	+0.3	+0.3	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	N.D.	+0.2	-0.3	+0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.1	N.D.	-0.1	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.8	N.D.	+0.1	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	N.D.	+0.7	-0.1	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	N.D.	+0.2	-0.4	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+1.5	N.D.	-0.1	-0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.8	N.D.	+0.4	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	N.D.	+0.1	+0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.9	N.D.	+0.2	+0.3	+0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.2	N.D.	+2.5	+0.2	+0.2