Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS07440 and BPHYT_RS07445 are separated by 191 nucleotidesBPHYT_RS07445 and BPHYT_RS07450 are separated by 282 nucleotidesBPHYT_RS07450 and BPHYT_RS07455 overlap by 4 nucleotidesBPHYT_RS07455 and BPHYT_RS07460 are separated by 23 nucleotides BPHYT_RS07440: BPHYT_RS07440 - LysR family transcriptional regulator, at 1,691,169 to 1,692,062 _RS07440 BPHYT_RS07445: BPHYT_RS07445 - carbonate dehydratase, at 1,692,254 to 1,692,826 _RS07445 BPHYT_RS07450: BPHYT_RS07450 - histidine kinase, at 1,693,109 to 1,694,524 _RS07450 BPHYT_RS07455: BPHYT_RS07455 - transcriptional regulator, at 1,694,521 to 1,695,204 _RS07455 BPHYT_RS07460: BPHYT_RS07460 - hypothetical protein, at 1,695,228 to 1,695,581 _RS07460
Group Condition BPHYT_RS07440 BPHYT_RS07445 BPHYT_RS07450 BPHYT_RS07455 BPHYT_RS07460
phage 36hr PHYTO11 MOI 1 N.D. N.D. -1.3 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. N.D. -1.1 N.D. N.D.
phage 24hr PHYTO11 MOI 0.1 N.D. N.D. -1.1 N.D. N.D.
temperature LB, 37C N.D. N.D. -1.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.9 N.D. N.D.
carbon source Azelaic (C) N.D. N.D. -0.8 N.D. N.D.
phage 24hr PHYTO4 MOI 10 N.D. N.D. -0.7 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -0.6 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. -0.6 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. -0.6 N.D. N.D.
phage 24hr PHYTO7 MOI 1 N.D. N.D. -0.6 N.D. N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. N.D. -0.6 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. -0.6 N.D. N.D.
nutrient Min media with glucose N.D. N.D. +0.6 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. +0.6 N.D. N.D.
tn7 efficiency Outgrowth after Tn7 transformation N.D. N.D. +0.6 N.D. N.D.
phage 24hr PHYTO1 MOI 1 N.D. N.D. +0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.7 N.D. N.D.
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.7 N.D. N.D.
phage 36hr PHYTO4 MOI 1 N.D. N.D. +0.7 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X N.D. N.D. +0.7 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.7 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 N.D. N.D. +0.7 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. +0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +0.8 N.D. N.D.
nutrient casaminos N.D. N.D. +0.8 N.D. N.D.
phage 36hr PHYTO10 MOI 10 N.D. N.D. +1.0 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.1 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. +1.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.7 N.D. N.D.
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