Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS07385	BPHYT_RS07390	BPHYT_RS07395	BPHYT_RS07400	BPHYT_RS07405
motility	outer cut, LB soft agar motility assay	-1.1	-0.4	-0.4	-0.3	-0.4
phage	24hr PHYTO4 MOI 10	-0.3	-0.1	+0.2	-1.7	-0.5
phage	24hr PHYTO MOI 0.1	+0.5	-0.2	+0.0	-2.4	+0.2
phage	24hr PHYTO8 MOI 1	+0.2	+0.1	-0.0	-2.2	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.5	+0.7	-0.4	-0.9
phage	24hr PHYTO2 MOI 1	+0.4	+0.4	+0.1	-1.5	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2	-0.4	+0.3	+0.3	-0.7
motility	outer cut, LB soft agar motility assay	-0.8	+0.8	+0.1	-0.5	-1.1
nophagecontrol	36hr Phyto Lib Only	+0.6	-0.1	-0.1	-1.0	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.9	-0.2	-0.7	-0.9	-1.3
phage	36hr PHYTO4 MOI 1	+0.0	+0.1	-0.2	-2.0	+0.8
nophagecontrol	36hr Phyto Lib only	+0.8	-0.4	-0.6	-1.1	+0.1
phage	24hr PHYTO7 MOI 1	+0.2	+0.9	-0.2	-1.5	-0.5
phage	36hr PHYTO6 MOI 10	+0.6	-0.1	+0.3	-1.5	-0.4
phage	PHYTO3 MOI 0.1	-1.1	+0.5	+0.3	-1.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	+0.4	-0.1	+1.2	-0.9
phage	24hr PHYTO2 MOI 0.1	+0.9	-0.0	-0.0	-1.4	+0.3
phage	P. phyto PHYTO2 MOI 1	-0.2	+0.9	-0.3	-1.2	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	+0.8	-0.6	-0.9	+0.6	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	-0.5	-0.5	+1.6	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.6	-0.3	-1.0	+0.1	+0.7
phage	24hr PHYTO3 MOI 0.1	+0.8	+0.6	-0.1	-1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	+1.0	+0.5	+0.5	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.3	+0.2	-0.4	+0.4	-0.5
carbon source	Phenylacetic 5 mM (C)	-0.8	+0.1	-0.2	+1.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.2	+0.0	-0.3	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.3	+0.8	+1.2	-1.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+1.0	-0.1	-0.0	-1.5	+2.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.9	+0.4	-0.6	+2.5	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+2.3	+0.3	-0.2	+0.3