Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS07310	BPHYT_RS07315	BPHYT_RS07320	BPHYT_RS07325	BPHYT_RS07330
phage	24hr PHYTO2 MOI 1	-0.4	-0.5	-4.0	-1.6	-0.2
phage	36hr PHYTO7 MOI 0.1	+0.3	-0.1	-4.0	-1.6	-0.4
carbon source	adipate (C)	-0.3	-0.1	-1.2	-3.9	+0.2
phage	36hr PHYTO6 MOI 0.1	-0.5	+0.7	-3.8	-1.4	-0.0
phage	24hr PHYTO6 MOI 1	+0.0	+0.7	-3.8	-1.4	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.0	+0.8	-3.7	-1.6	-0.1
phage	24hr PHYTO3 MOI 1	-0.2	+0.8	-3.8	-1.4	+0.3
phage	36hr PHYTO7 MOI 1	+0.1	-0.1	-3.6	-1.2	+0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.1	-0.1	-0.3	-4.0	+0.2
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.2	+0.2	-0.6	-3.9	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.7	-1.0	-2.3	+0.0
phage	24hr PHYTO1 MOI 1	-0.2	+0.1	-2.4	-1.6	+0.1
vitamin	With vitamins t1	+0.4	+0.2	-1.4	-3.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.5	-0.5	-2.7	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.0	-0.3	+0.9	-4.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.3	-0.7	-3.6	-0.0
phage	36hr PHYTO2 MOI 1	-0.3	+0.2	-2.1	-1.3	+0.0
phage	24hr PHYTO2 MOI 0.1	+0.1	+0.3	-2.3	-1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.4	-1.7	-1.8	+0.4
phage	36hr PHYTO2 MOI 1	-0.5	+0.5	-1.1	-1.4	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	+0.4	+0.6	-3.5	-0.2
nitrogen source	Uridine (N)	-0.7	-0.2	+1.0	-2.6	-0.2
nitrogen source	L-Phenylalanine (N)	-0.1	-0.1	+1.1	-3.4	-0.1
phage	24hr PHYTO MOI 0.1	+0.3	+0.5	-1.6	-1.5	-0.3
phage	36hr PHYTO4 MOI 1	+0.4	-0.1	-3.5	+0.4	+0.5
nitrogen source	NAG (N)	+0.2	-0.2	+0.8	-2.9	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.2	+0.2	-0.4	-3.4	+0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.3	+1.0	+0.7	-1.7	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.2	+0.6	-1.0	+1.8	-0.4
phage	24hr PHYTO6 MOI 0.1	+0.0	+0.5	-0.7	+2.6	+0.2