Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS07120 and BPHYT_RS07125 are separated by 76 nucleotidesBPHYT_RS07125 and BPHYT_RS07130 are separated by 12 nucleotidesBPHYT_RS07130 and BPHYT_RS07135 are separated by 24 nucleotidesBPHYT_RS07135 and BPHYT_RS07140 are separated by 9 nucleotides BPHYT_RS07120: BPHYT_RS07120 - biopolymer transporter TonB, at 1,615,573 to 1,616,280 _RS07120 BPHYT_RS07125: BPHYT_RS07125 - biopolymer transporter ExbB, at 1,616,357 to 1,617,262 _RS07125 BPHYT_RS07130: BPHYT_RS07130 - biopolymer transporter ExbD, at 1,617,275 to 1,617,697 _RS07130 BPHYT_RS07135: BPHYT_RS07135 - biopolymer transporter ExbD, at 1,617,722 to 1,618,150 _RS07135 BPHYT_RS07140: BPHYT_RS07140 - hypothetical protein, at 1,618,160 to 1,619,344 _RS07140
Group Condition BPHYT_RS07120 BPHYT_RS07125 BPHYT_RS07130 BPHYT_RS07135 BPHYT_RS07140
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -0.6 N.D. -2.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -3.2 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -2.0 N.D. -0.3
phage 24hr PHYTO11 MOI 0.1 N.D. N.D. -1.0 N.D. -1.1
stress Bacitracin 0.25 mg/ml N.D. N.D. -2.0 N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.7 N.D. -1.3
motility outer cut, LB soft agar motility assay N.D. N.D. -1.1 N.D. -0.8
temperature LB, 37C N.D. N.D. -1.6 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.0 N.D. -0.8
phage 24hr PHYTO3 MOI 10 N.D. N.D. -1.0 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.2 N.D. -0.6
nitrogen source L-Serine (N) N.D. N.D. -1.8 N.D. +0.1
nitrogen source L-Lysine (N) N.D. N.D. -1.5 N.D. -0.2
phage P. phyto PHYTO2 MOI 0.1 N.D. N.D. +0.4 N.D. -1.3
phage 36hr PHYTO10 MOI 10 N.D. N.D. +0.4 N.D. -1.2
supernatant control Vogels_fungal_media 0.1X N.D. N.D. +0.8 N.D. -1.2
phage 24hr PHYTO1 MOI 10 N.D. N.D. -1.0 N.D. +0.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.3 N.D. -1.3
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. N.D. +0.9 N.D. -0.8
carbon source D-Glucose (C) N.D. N.D. +1.0 N.D. -0.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.0 N.D. -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.0 N.D. -0.7
phage 36hr PHYTO4 MOI 1 N.D. N.D. -0.6 N.D. +1.0
phage 24hr PHYTO MOI 0.1 N.D. N.D. +0.4 N.D. +1.3
carbon source D-Galacturonic Acid (C) N.D. N.D. +1.1 N.D. +0.6
phage 36hr PHYTO2 MOI 1 N.D. N.D. +0.9 N.D. +0.9
phage 36hr PHYTO6 MOI 0.1 N.D. N.D. +0.4 N.D. +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.6 N.D. +1.3
phage 36hr PHYTO9 MOI 1 N.D. N.D. +1.0 N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +1.8 N.D. +0.3
remove
BPHYT_RS07120
plot		 remove
BPHYT_RS07125
plot		 remove
BPHYT_RS07130		 remove
BPHYT_RS07135
plot		 remove
BPHYT_RS07140
plot