Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS07060	BPHYT_RS07065	BPHYT_RS07070	BPHYT_RS07075	BPHYT_RS07080
motility	outer cut, LB soft agar motility assay	-0.2	+0.1	-0.2	N.D.	-2.2
nitrogen source	L-Lysine (N)	-1.4	-0.3	-0.3	N.D.	-0.3
r2a control	R2A control	-0.5	-0.5	-0.1	N.D.	-1.0
nutrient	Min media with glucose	-0.8	-0.0	-0.1	N.D.	-1.0
phage	36hr PHYTO8 MOI 0.1	-0.2	-0.5	-0.2	N.D.	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	-0.7	+0.2	N.D.	-0.1
carbon source	Phenylacetic 5 mM (C)	-1.6	-0.2	-0.1	N.D.	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.2	-0.5	-0.2	N.D.	-1.2
carbon source	D-Fructose (C)	-1.0	-0.4	-0.1	N.D.	+0.7
supernatant control	Vogels_fungal_media; pH 5.5	-1.9	+0.6	+0.6	N.D.	+0.0
phage	36hr PHYTO9 MOI 0.1	+0.9	-0.1	-0.7	N.D.	-0.7
phage	24hr PHYTO9 MOI 0.1	-0.8	+0.3	-0.2	N.D.	+0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.0	+0.4	-0.1	N.D.	+0.6
carbon source	L-Fucose (C)	-0.5	-0.1	-0.5	N.D.	+0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.7	+0.2	N.D.	-1.1
vitamin	With vitamins t2	+0.6	+0.3	-0.3	N.D.	-0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.8	-0.3	-0.7	N.D.	+0.2
phage	24hr PHYTO6 MOI 10	-0.8	+0.3	-0.3	N.D.	+0.9
phage	24hr PHYTO3 MOI 0.1	+0.7	+0.0	-0.8	N.D.	+0.4
phage	24hr PHYTO3 MOI 10	-0.3	-0.6	+0.1	N.D.	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.3	-0.3	N.D.	+1.2
phage	36hr PHYTO8 MOI 10	-0.4	+0.5	-0.3	N.D.	+0.7
phage	24hr PHYTO6 MOI 1	-0.6	+0.4	+0.3	N.D.	+0.5
phage	24hr PHYTO8 MOI 1	+0.6	+0.3	-0.5	N.D.	+0.5
phage	36hr PHYTO11 MOI 0.1	+0.4	+0.4	-0.3	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.2	+0.5	+0.2	N.D.	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.8	+0.9	+0.4	N.D.	-0.3
phage	P. phyto PHYTO2 MOI 1	+0.3	+0.7	-0.1	N.D.	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.4	-0.2	N.D.	+2.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+1.4	+0.5	+0.2	N.D.	+0.4