Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06910	BPHYT_RS06915	BPHYT_RS06920	BPHYT_RS06925	BPHYT_RS06930
stress	Nickel (II) chloride 1 mM	-2.2	-2.0	-2.8	-2.7	-0.9
nitrogen source	L-Citrulline (N)	-1.4	-0.8	-3.0	-1.6	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-2.4	+0.1	-0.6	-0.7
carbon source	D-Glucose (C)	-0.6	-0.4	-0.2	-0.7	-1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-1.7	-0.8	-0.4	-0.3
nitrogen source	D-Alanine (N)	-1.3	-0.2	-1.4	-1.1	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-2.2	-0.0	+0.3	-0.5
stress	Nickel (II) chloride 0.5 mM	-0.7	-0.4	-0.4	-0.5	-0.8
carbon source	Tween 20 (C)	-1.4	+0.2	-0.5	-0.5	-0.5
carbon source	L-Phenylalanine (C)	-0.8	-0.2	-0.5	-0.7	-0.5
carbon source	D,L-Lactate (C)	-0.5	-0.9	+0.1	-0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.0	-0.8	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-1.2	-0.3	-0.5	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.6	-1.2	+0.3	-0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.9	-0.4	-0.8	-0.5
phage	36hr PHYTO1 MOI 10	+0.5	-1.9	-0.5	-0.3	+0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.7	+0.6	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-1.3	-0.1	-0.2	-0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.3	-1.5	+0.0	-0.4	+0.4
phage	24hr PHYTO6 MOI 10	+0.6	-0.6	+0.3	+0.2	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	+1.4	-0.4	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-1.0	-0.0	-0.2	+1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.8	-0.4	+0.2	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	+0.4	-0.1	-0.4	+1.4
phage	24hr PHYTO9 MOI 0.1	+0.8	+0.0	+0.7	+0.1	-1.0
phage	36hr PHYTO8 MOI 10	+0.6	+0.5	-0.9	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.6	+0.0	+0.0	+2.4
carbon source	Phenylacetic 5 mM (C)	+0.8	+0.6	+0.6	+0.8	-0.7
phage	P. phyto PHYTO2 MOI 1	+0.7	+0.5	+0.7	+0.5	+0.3
phage	36hr PHYTO11 MOI 0.1	+0.6	+1.8	+0.3	-0.2	+0.3