Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06895	BPHYT_RS06900	BPHYT_RS06905	BPHYT_RS06910	BPHYT_RS06915
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	-4.6	-5.1	-0.0	-2.0
carbon source	Tween 20 (C)	+0.2	-6.4	-0.5	-1.4	+0.2
nitrogen source	L-Citrulline (N)	+0.3	-5.5	-0.5	-1.4	-0.8
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-4.0	-3.7	-0.1	+0.4
carbon source	L-Tryptophan (C)	+0.1	-6.6	-0.3	-0.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.1	-3.7	-2.6	-0.4	-0.2
carbon source	L-Phenylalanine (C)	+0.1	-5.8	+0.0	-0.8	-0.2
carbon source	D,L-Lactate (C)	+0.2	-6.0	-0.0	-0.6	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-3.7	-1.2	-0.1	-1.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.0	-3.1	-2.6	-0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-3.1	-0.5	-0.2	-2.4
carbon source	D-Glucose (C)	+0.1	-6.4	-0.2	-0.1	+0.2
carbon source	L-Histidine (C)	+0.0	-5.8	-0.4	-0.1	-0.0
carbon source	succinate (C)	+0.1	-5.8	+0.1	-0.8	+0.1
carbon source	Dodecandioic (C)	-0.0	-5.4	-0.0	-0.3	-0.5
carbon source	Protocatechuic Acid (C)	-0.2	-5.5	+0.2	-0.6	-0.1
carbon source	Azelaic (C)	+0.2	-4.7	-0.1	-0.6	-0.9
carbon source	succinate (C)	+0.2	-5.7	-0.1	-0.4	-0.0
carbon source	Protocatechuic Acid (C)	-0.1	-5.6	+0.1	+0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-4.1	-0.7	+0.3	-1.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-4.6	-0.8	+0.3	-0.7
nitrogen source	L-Asparagine (N)	+0.1	-5.2	-0.1	-0.8	+0.0
nitrogen source	L-Lysine (N)	+0.2	-5.7	-0.2	-0.7	+0.5
nitrogen source	L-Proline (N)	+0.2	-5.1	-0.2	-0.8	+0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-4.7	-0.9	+0.4	-0.3
nitrogen source	Uridine (N)	+0.0	-5.2	+0.2	-0.8	+0.3
carbon source	D-Gluconic Acid (C)	+0.3	-5.7	-0.1	+0.2	+0.0
carbon source	L-Rhamnose (C)	+0.3	-5.5	+0.0	-0.3	+0.8
carbon source	Sebacic (C)	-0.0	-5.3	-0.2	+0.2	+0.7
nitrogen source	L-Phenylalanine (N)	+0.0	-5.5	+0.2	+0.1	+1.1