Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06875	BPHYT_RS06880	BPHYT_RS06885	BPHYT_RS06890	BPHYT_RS06895
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.3	-0.1	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.2	-0.1	-0.2	-0.2
carbon source	Protocatechuic Acid (C)	-0.1	-0.2	-0.0	-0.7	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.4	-0.2	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	-0.6	+0.0	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.1	-0.0	-0.2	-0.3
phage	24hr PHYTO6 MOI 0.1	-0.5	+0.2	-0.0	+0.1	-0.5
carbon source	L-Fucose (C)	-0.4	-0.1	+0.2	-0.5	+0.0
phage	24hr PHYTO10 MOI 10	-0.3	-0.1	-0.2	+0.4	-0.5
phage	24hr PHYTO4 MOI 10	-0.8	+0.2	+0.1	-0.0	-0.1
carbon source	Putrescine (C)	+0.2	-0.7	+0.0	-0.4	+0.2
phage	36hr PHYTO6 MOI 1	-0.4	+0.1	-0.1	+0.2	-0.3
carbon source	D-Glucosamine Hydrochloride (C)	-0.1	-0.4	+1.1	-0.8	-0.3
phage	36hr PHYTO2 MOI 1	-0.5	+0.3	+0.2	+0.1	-0.5
nophagecontrol	24hr Phyto Lib Only	-0.3	-0.2	+0.2	+0.3	-0.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	-0.3	-0.1	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.2	-0.1	-0.3	-0.2
phage	36hr PHYTO9 MOI 1	-0.7	+0.2	+0.0	+0.3	-0.2
phage	36hr PHYTO3 MOI 1	-0.2	-0.3	-0.0	+0.4	-0.2
phage	36hr PHYTO11 MOI 1	+0.2	-0.4	+0.3	-0.2	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.0	+0.3	-0.3	-0.3
phage	36hr PHYTO4 MOI 1	-0.7	+0.1	+0.2	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.5	-0.0	+0.2	-0.1
phage	36hr PHYTO2 MOI 0.1	-0.2	+0.3	+0.0	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.2	+0.5	-0.5	+0.2
r2a control	R2A control	+0.2	-0.2	+0.1	+0.4	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.4	+0.2	-0.2	+0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.4	+0.3	-0.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.0	-0.1	+0.8	-0.1
stress	Paraquat dichloride 0.064 mg/ml	+0.1	+0.1	-0.1	+1.3	+0.0