Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06850 and BPHYT_RS06855 are separated by 120 nucleotidesBPHYT_RS06855 and BPHYT_RS06860 are separated by 11 nucleotidesBPHYT_RS06860 and BPHYT_RS06865 are separated by 123 nucleotidesBPHYT_RS06865 and BPHYT_RS06870 are separated by 679 nucleotides BPHYT_RS06850: BPHYT_RS06850 - DNA polymerase III subunit alpha, at 1,549,762 to 1,553,343 _RS06850 BPHYT_RS06855: BPHYT_RS06855 - dTDP-4-dehydrorhamnose reductase, at 1,553,464 to 1,554,384 _RS06855 BPHYT_RS06860: BPHYT_RS06860 - heavy metal transporter, at 1,554,396 to 1,554,635 _RS06860 BPHYT_RS06865: BPHYT_RS06865 - MerR family transcriptional regulator, at 1,554,759 to 1,555,181 _RS06865 BPHYT_RS06870: BPHYT_RS06870 - hypothetical protein, at 1,555,861 to 1,556,205 _RS06870
Group Condition BPHYT_RS06850 BPHYT_RS06855 BPHYT_RS06860 BPHYT_RS06865 BPHYT_RS06870
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.2 N.D. -1.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.1 N.D. -1.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.3 N.D. -0.6 -0.1
vitamin With vitamins t2 +0.1 +0.2 N.D. -0.8 +0.2
phage 36hr PHYTO7 MOI 1 +0.1 +0.5 N.D. -0.6 -0.2
phage 36hr PHYTO2 MOI 1 +0.0 +0.6 N.D. -0.5 -0.3
nitrogen source L-Serine (N) +0.2 +0.4 N.D. -0.3 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.2 -0.1 N.D. +0.5 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.0 -0.2 N.D. +0.7 -0.2
phage 24hr PHYTO3 MOI 10 +0.1 +0.6 N.D. -0.4 +0.1
vitamin No vitamins t1 +0.3 +0.6 N.D. -0.5 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.2 N.D. +0.5 +0.5
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.2 +0.4 N.D. -0.4 +0.3
carbon source Malonic (C) +0.4 +0.1 N.D. -0.3 +0.5
phage 24hr PHYTO7 MOI 10 +0.2 +0.7 N.D. -0.2 -0.1
phage 24hr PHYTO4 MOI 10 -0.0 +1.1 N.D. -0.3 -0.1
phage 36hr PHYTO9 MOI 1 +0.1 +0.2 N.D. +0.7 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.3 N.D. +0.6 +0.5
phage 36hr PHYTO8 MOI 10 +0.1 +0.5 N.D. +0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.4 N.D. -0.1 +0.3
phage P. phyto corn MOI 1 +0.1 +1.3 N.D. -0.3 -0.2
stress Bacitracin 0.25 mg/ml +0.1 +0.7 N.D. +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.3 N.D. +0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 +0.3 N.D. +0.8 +0.3
phage 24hr PHYTO6 MOI 10 +0.1 +1.0 N.D. +0.4 -0.1
phage P. phyto corn MOI 0.1 +0.2 +0.4 N.D. +0.5 +0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.1 N.D. +0.5 +0.7
phage P. phyto PHYTO2 MOI 1 +0.3 +1.0 N.D. +0.6 +0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +0.1 N.D. +1.3 +1.0
phage P. phyto PHYTO2 MOI 1 +0.2 +1.1 N.D. +0.5 +0.6
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