Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06785	BPHYT_RS06790	BPHYT_RS06795	BPHYT_RS06800	BPHYT_RS06805
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.9	+0.3	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.7	+0.7	-0.1	-0.9
phage	24hr PHYTO9 MOI 0.1	-0.2	-0.9	-0.4	-0.1	-0.2
phage	36hr PHYTO1 MOI 1	+0.2	-1.3	-0.2	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-1.3	+0.2	+0.1	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.0	+0.1	-0.1	-0.4
phage	24hr PHYTO4 MOI 10	+0.3	-0.5	-0.1	-0.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.8	+0.2	-0.3	-0.3
phage	36hr PHYTO11 MOI 1	+0.0	-1.1	-0.3	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-1.1	+0.2	+0.2	-0.3
phage	24hr PHYTO2 MOI 1	-0.3	-1.2	-0.1	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.6	+0.2	-0.4	-0.4
phage	24hr PHYTO11 MOI 0.1	-0.3	-0.7	-0.4	-0.0	+0.4
phage	36hr PHYTO2 MOI 1	+0.0	-1.1	-0.1	-0.1	+0.4
stress	Chloride 200 mM	+0.1	-1.5	+0.0	+0.0	+0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-0.3	+0.3	-0.3	-0.7
phage	24hr PHYTO6 MOI 0.1	+0.0	-1.0	-0.3	-0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.9	+0.2	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.1	+0.4	+0.1	-0.2
phage	36hr PHYTO2 MOI 1	+0.3	-1.1	+0.2	+0.0	+0.2
phage	36hr PHYTO8 MOI 0.1	+0.3	-1.0	+0.1	+0.3	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	+0.5	-0.2	+0.1	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-1.1	+0.3	+0.3	+0.1
carbon source	Gly-Glu (C)	-0.3	-0.2	+0.9	-0.3	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.5	-1.0	+0.2	+0.5	-0.2
phage	P. phyto PHYTO2 MOI 1	+0.2	-0.3	-0.5	+0.3	+0.5
phage	P. phyto PHYTO2 MOI 0.1	+0.3	+0.1	-0.5	-0.2	+0.5
stress	A22 0.005 mg/ml	-0.1	+1.5	+0.1	-0.1	-0.2
temperature	LB, 37C	-0.3	+1.6	+0.2	-0.3	+0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.0	-0.1	+2.5	-0.0	-0.3