Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS06765	BPHYT_RS06770	BPHYT_RS06775	BPHYT_RS06780	BPHYT_RS06785
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	-0.1	-0.8	-0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.4	+0.1	-0.6	+0.0	-0.2
carbon source	Tween 20 (C)	-1.3	+0.1	-0.8	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.0	-0.9	+0.1	-0.2
motility	inner cut, LB soft agar motility assay	-0.1	+0.1	-1.2	-0.5	-0.2
phage	PHYTO3 MOI 0.1	-0.5	+0.1	-1.0	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.0	-0.9	-0.6	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.1	-1.5	+0.2	+0.1
carbon source	succinate (C)	-0.5	-0.1	-0.4	-0.7	+0.3
phage	24hr PHYTO3 MOI 1	-0.3	+0.3	-2.0	+0.5	+0.1
phage	36hr PHYTO6 MOI 1	-0.9	+0.3	-1.0	+0.3	-0.0
phage	36hr PHYTO8 MOI 10	-0.0	+0.1	-1.6	+0.2	+0.0
phage	36hr PHYTO3 MOI 1	-0.4	+0.2	-1.2	+0.1	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.2	-0.7	+0.6	-0.2
phage	P. phyto PHYTO2 MOI 1	+0.1	-0.1	-1.6	+0.5	+0.2
phage	24hr PHYTO9 MOI 10	+0.5	+0.2	-1.7	+0.3	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	-0.1	-1.6	+0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.3	-0.5	+0.5	-0.3
phage	24hr PHYTO9 MOI 0.1	-0.6	+0.1	+0.5	+0.3	-0.2
phage	24hr PHYTO2 MOI 0.1	-1.1	+0.3	+0.7	+0.3	+0.1
phage	24hr PHYTO10 MOI 1	-0.7	+0.1	+0.6	+0.4	-0.1
phage	24hr PHYTO3 MOI 10	-0.4	-0.0	-0.5	+1.0	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.5	+0.1	+1.2	-0.4	+0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.9	+0.2	-0.4	+0.3	+0.0
phage	24hr PHYTO6 MOI 10	-0.4	+0.2	+0.6	+0.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	+0.2	+0.2	-0.7	+0.1
phage	36hr PHYTO8 MOI 0.1	-0.3	+0.3	+0.3	+0.7	+0.3
phage	36hr PHYTO11 MOI 0.1	-0.1	+0.1	+1.4	+0.4	+0.3
phage	36hr PHYTO7 MOI 1	+0.4	+0.3	+0.9	+0.2	+0.3
phage	P. phyto PHYTO2 MOI 1	+0.9	+0.2	+1.3	+0.4	+0.0