Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06600 and BPHYT_RS06605 are separated by 151 nucleotidesBPHYT_RS06605 and BPHYT_RS06610 are separated by 135 nucleotidesBPHYT_RS06610 and BPHYT_RS06615 are separated by 82 nucleotidesBPHYT_RS06615 and BPHYT_RS06620 are separated by 113 nucleotides BPHYT_RS06600: BPHYT_RS06600 - polynucleotide phosphorylase/polyadenylase, at 1,498,145 to 1,500,295 _RS06600 BPHYT_RS06605: BPHYT_RS06605 - NAD(P)H quinone oxidoreductase, at 1,500,447 to 1,501,463 _RS06605 BPHYT_RS06610: BPHYT_RS06610 - triosephosphate isomerase, at 1,501,599 to 1,502,378 _RS06610 BPHYT_RS06615: BPHYT_RS06615 - preprotein translocase subunit SecG, at 1,502,461 to 1,502,838 _RS06615 BPHYT_RS06620: BPHYT_RS06620 - tRNA-Leu, at 1,502,952 to 1,503,036 _RS06620
Group Condition BPHYT_RS06600 BPHYT_RS06605 BPHYT_RS06610 BPHYT_RS06615 BPHYT_RS06620
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -6.2 -0.5 -3.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.9 -0.7 -3.3 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -3.3 -0.5 -3.0 N.D. N.D.
carbon source L-Glutamine (C) -1.5 +0.0 -5.0 N.D. N.D.
carbon source NAG (C) -0.6 -0.3 -5.2 N.D. N.D.
carbon source Tween 20 (C) -1.0 -0.1 -5.0 N.D. N.D.
carbon source D-Galactose (C) -0.8 -0.2 -5.1 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -2.1 -0.1 -3.8 N.D. N.D.
carbon source D-Xylose (C) -1.2 -0.2 -4.6 N.D. N.D.
carbon source L-Arabinose (C) -0.9 -0.0 -5.0 N.D. N.D.
carbon source L-Proline (C) -0.7 -0.1 -5.2 N.D. N.D.
carbon source L-Phenylalanine (C) -0.8 -0.1 -5.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.2 -0.7 -4.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.7 -0.2 -4.0 N.D. N.D.
carbon source Sebacic (C) -1.9 +0.2 -4.2 N.D. N.D.
carbon source D-Galacturonic Acid (C) -0.7 -0.0 -5.1 N.D. N.D.
nitrogen source Ammonium chloride (N) -0.5 -0.3 -5.1 N.D. N.D.
carbon source L-Tryptophan (C) -0.5 -0.1 -5.1 N.D. N.D.
carbon source Sebacic (C) -1.0 -0.3 -4.3 N.D. N.D.
carbon source Phenylacetic 5 mM (C) -1.5 -0.2 -3.9 N.D. N.D.
carbon source D-Alanine (C) +0.1 -0.4 -5.2 N.D. N.D.
nitrogen source Carnitine Hydrochloride (N) -0.5 +0.2 -5.1 N.D. N.D.
nitrogen source L-Lysine (N) +0.3 -1.1 -4.5 N.D. N.D.
carbon source D,L-Lactate (C) -0.4 +0.1 -5.1 N.D. N.D.
nitrogen source L-Alanine (N) -0.4 +0.3 -5.1 N.D. N.D.
nitrogen source L-Serine (N) -0.1 +0.6 -5.2 N.D. N.D.
carbon source Suberic (C) -1.1 +0.6 -4.1 N.D. N.D.
carbon source L-Histidine (C) +1.3 -0.1 -4.2 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.9 +1.4 -2.4 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.4 +1.5 -2.7 N.D. N.D.
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