Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06405 and BPHYT_RS06410 are separated by 247 nucleotidesBPHYT_RS06410 and BPHYT_RS06415 are separated by 484 nucleotidesBPHYT_RS06415 and BPHYT_RS06420 are separated by 363 nucleotidesBPHYT_RS06420 and BPHYT_RS06425 are separated by 63 nucleotides BPHYT_RS06405: BPHYT_RS06405 - phosphoribosylamine--glycine ligase, at 1,457,486 to 1,458,784 _RS06405 BPHYT_RS06410: BPHYT_RS06410 - transcriptional regulator, at 1,459,032 to 1,459,760 _RS06410 BPHYT_RS06415: BPHYT_RS06415 - uracil phosphoribosyltransferase, at 1,460,245 to 1,460,895 _RS06415 BPHYT_RS06420: BPHYT_RS06420 - oxidoreductase, at 1,461,259 to 1,462,038 _RS06420 BPHYT_RS06425: BPHYT_RS06425 - methylglyoxal synthase, at 1,462,102 to 1,462,491 _RS06425
Group Condition BPHYT_RS06405 BPHYT_RS06410 BPHYT_RS06415 BPHYT_RS06420 BPHYT_RS06425
carbon source Sebacic (C) -6.8 -3.2 -0.3 N.D. +0.5
carbon source L-Glutamine (C) -6.4 -0.8 -0.4 N.D. -0.0
carbon source 2-Deoxy-D-Ribose (C) -3.6 -4.4 +0.4 N.D. +0.6
carbon source D-Glucose (C) -5.2 -1.9 +0.1 N.D. -0.1
carbon source D,L-Lactate (C) -5.3 -1.5 -0.0 N.D. -0.1
supernatant control Vogels_fungal_media; pH 5.5 -5.4 -1.1 -0.7 N.D. +0.5
carbon source 2-Deoxy-D-Ribose (C) -3.3 -4.4 +0.3 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -5.7 -1.1 +0.0 N.D. +0.0
carbon source D-Mannose (C) -4.9 -1.3 -0.2 N.D. -0.2
carbon source 2-Deoxy-D-Ribose (C) -4.1 -2.7 +0.1 N.D. +0.2
nitrogen source L-Alanine (N) -5.7 -1.1 -0.1 N.D. +0.4
carbon source L-Lactate (C) -4.8 -1.6 -0.5 N.D. +0.3
nitrogen source D-Alanine (N) -4.9 -1.1 -0.4 N.D. +0.1
carbon source Protocatechuic Acid (C) -5.5 -0.8 -0.1 N.D. +0.1
nitrogen source Ammonium chloride (N) -5.1 -1.3 +0.2 N.D. -0.1
nitrogen source L-Glutamine (N) -5.2 -1.1 +0.4 N.D. -0.3
carbon source D-Fructose (C) -4.6 -1.1 +0.1 N.D. -0.5
nitrogen source L-Lysine (N) -6.2 +0.4 +0.4 N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -5.2 -1.3 +0.1 N.D. +0.4
carbon source L-Phenylalanine (C) -4.5 -1.5 +0.0 N.D. +0.2
carbon source 2-Deoxy-D-Ribose (C) -3.4 -3.0 +0.3 N.D. +0.5
motility inner cut, LB soft agar motility assay -1.9 -3.8 +0.5 N.D. -0.4
carbon source Dodecandioic (C) -4.4 -1.8 +0.2 N.D. +0.4
carbon source Sebacic (C) -4.4 -1.7 +0.3 N.D. +0.3
nitrogen source L-Proline (N) -4.5 -1.4 +0.4 N.D. +0.1
nitrogen source Putrescine (N) -3.6 -1.6 +0.4 N.D. -0.5
nitrogen source NAG (N) -4.7 -0.5 +0.5 N.D. -0.6
nutrient Min media with glucose -4.7 -1.1 +0.4 N.D. +0.4
carbon source Tween 20 (C) -5.6 +0.1 +0.1 N.D. +0.6
carbon source D-Glucose (C) -4.0 -1.3 +0.2 N.D. +0.7
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