Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06400	BPHYT_RS06405	BPHYT_RS06410	BPHYT_RS06415	BPHYT_RS06420
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-5.9	-3.2	-1.5	-0.7	N.D.
carbon source	Sebacic (C)	+0.2	-6.8	-3.2	-0.3	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-5.0	-3.1	-1.5	-0.3	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-4.8	-1.9	-2.1	-0.3	N.D.
carbon source	L-Tryptophan (C)	-4.3	-4.3	-0.8	+0.4	N.D.
carbon source	L-Glutamine (C)	-1.2	-6.4	-0.8	-0.4	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-4.8	-3.2	-0.9	+0.1	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-5.3	-2.3	-1.0	-0.2	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-5.6	-2.0	-1.0	-0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.4	-5.2	-1.3	+0.1	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-3.7	-2.7	-2.0	-0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.7	-5.7	-1.1	+0.0	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-4.3	-2.6	-1.6	+0.1	N.D.
nitrogen source	L-Alanine (N)	-1.4	-5.7	-1.1	-0.1	N.D.
carbon source	2-Deoxy-D-Ribose (C)	-0.4	-3.6	-4.4	+0.4	N.D.
carbon source	Protocatechuic Acid (C)	-1.5	-5.5	-0.8	-0.1	N.D.
carbon source	2-Deoxy-D-Ribose (C)	-0.4	-3.3	-4.4	+0.3	N.D.
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.8	-3.6	-1.3	-0.1	N.D.
carbon source	2-Deoxy-D-Ribose (C)	-0.7	-4.1	-2.7	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.4	-3.4	-0.7	-0.0	N.D.
carbon source	D-Glucose (C)	-0.3	-5.2	-1.9	+0.1	N.D.
carbon source	D,L-Lactate (C)	-0.5	-5.3	-1.5	-0.0	N.D.
carbon source	L-Phenylalanine (C)	-1.3	-4.5	-1.5	+0.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.2	-2.7	-0.5	-0.8	N.D.
carbon source	L-Lactate (C)	-0.4	-4.8	-1.6	-0.5	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-5.4	-1.1	-0.7	N.D.
nitrogen source	L-Glutamine (N)	-1.0	-5.2	-1.1	+0.4	N.D.
nitrogen source	L-Lysine (N)	-1.5	-6.2	+0.4	+0.4	N.D.
carbon source	2-Deoxy-D-Ribose (C)	-0.7	-3.4	-3.0	+0.3	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-2.1	-4.1	-0.6	+0.4	N.D.