Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06390 and BPHYT_RS06395 are separated by 5 nucleotidesBPHYT_RS06395 and BPHYT_RS06400 are separated by 89 nucleotidesBPHYT_RS06400 and BPHYT_RS06405 are separated by 327 nucleotidesBPHYT_RS06405 and BPHYT_RS06410 are separated by 247 nucleotides BPHYT_RS06390: BPHYT_RS06390 - ribosome-associated protein IOJAP, at 1,455,004 to 1,455,468 _RS06390 BPHYT_RS06395: BPHYT_RS06395 - nicotinic acid mononucleotide adenylyltransferase, at 1,455,474 to 1,456,145 _RS06395 BPHYT_RS06400: BPHYT_RS06400 - oxygen-dependent coproporphyrinogen-III oxidase, at 1,456,235 to 1,457,158 _RS06400 BPHYT_RS06405: BPHYT_RS06405 - phosphoribosylamine--glycine ligase, at 1,457,486 to 1,458,784 _RS06405 BPHYT_RS06410: BPHYT_RS06410 - transcriptional regulator, at 1,459,032 to 1,459,760 _RS06410
Group Condition BPHYT_RS06390 BPHYT_RS06395 BPHYT_RS06400 BPHYT_RS06405 BPHYT_RS06410
carbon source Sebacic (C) -1.0 N.D. +0.2 -6.8 -3.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. -5.0 -3.1 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 N.D. -2.4 -5.2 -1.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.6 N.D. -5.9 -3.2 -1.5
carbon source Protocatechuic Acid (C) -1.9 N.D. -1.5 -5.5 -0.8
carbon source 2-Deoxy-D-Ribose (C) -1.1 N.D. -0.4 -3.6 -4.4
carbon source L-Tryptophan (C) +0.2 N.D. -4.3 -4.3 -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -4.3 -2.6 -1.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -4.8 -3.2 -0.9
carbon source 2-Deoxy-D-Ribose (C) -0.8 N.D. -0.4 -3.3 -4.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.0 N.D. -4.8 -1.9 -2.1
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -3.7 -2.7 -2.0
nitrogen source L-Alanine (N) -0.5 N.D. -1.4 -5.7 -1.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -5.3 -2.3 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 N.D. -3.4 -3.4 -0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -5.6 -2.0 -1.0
carbon source L-Glutamine (C) +0.3 N.D. -1.2 -6.4 -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.2 N.D. -2.1 -3.0 -0.9
carbon source 2-Deoxy-D-Ribose (C) -0.5 N.D. -0.7 -4.1 -2.7
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -2.8 -3.6 -1.3
carbon source D-Glucose (C) -0.4 N.D. -0.3 -5.2 -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 N.D. -1.7 -5.7 -1.1
nitrogen source L-Glutamine (N) -0.4 N.D. -1.0 -5.2 -1.1
nitrogen source L-Proline (N) -0.9 N.D. -0.8 -4.5 -1.4
carbon source succinate (C) -1.0 N.D. -1.0 -4.3 -1.2
carbon source 2-Deoxy-D-Ribose (C) -0.5 N.D. -0.7 -3.4 -3.0
carbon source D,L-Lactate (C) -0.2 N.D. -0.5 -5.3 -1.5
carbon source Dodecandioic (C) -0.7 N.D. -0.6 -4.4 -1.8
supernatant control Vogels_fungal_media; pH 5.5 -0.9 N.D. +0.1 -5.4 -1.1
nitrogen source L-Lysine (N) +0.7 N.D. -1.5 -6.2 +0.4
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