Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06370 and BPHYT_RS06375 are separated by 526 nucleotidesBPHYT_RS06375 and BPHYT_RS06380 are separated by 9 nucleotidesBPHYT_RS06380 and BPHYT_RS06385 are separated by 369 nucleotidesBPHYT_RS06385 and BPHYT_RS06390 are separated by 74 nucleotides BPHYT_RS06370: BPHYT_RS06370 - carboxylesterase, at 1,450,453 to 1,451,454 _RS06370 BPHYT_RS06375: BPHYT_RS06375 - ribonuclease, at 1,451,981 to 1,453,450 _RS06375 BPHYT_RS06380: BPHYT_RS06380 - septum formation protein Maf, at 1,453,460 to 1,454,089 _RS06380 BPHYT_RS06385: BPHYT_RS06385 - ribosomal RNA large subunit methyltransferase H, at 1,454,459 to 1,454,929 _RS06385 BPHYT_RS06390: BPHYT_RS06390 - ribosome-associated protein IOJAP, at 1,455,004 to 1,455,468 _RS06390
Group Condition BPHYT_RS06370 BPHYT_RS06375 BPHYT_RS06380 BPHYT_RS06385 BPHYT_RS06390
phage P. phyto PHYTO2 MOI 1 -0.3 -0.8 +0.2 -0.1 -5.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -2.5 -0.1 +0.2 -2.2
carbon source propionate (C) +0.2 -3.6 +0.2 -0.1 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.0 -2.1 -0.5 -0.1 -0.9
vitamin No vitamins t2 -0.3 -3.0 -0.1 +0.2 -0.4
carbon source Protocatechuic Acid (C) +0.0 -1.8 +0.1 +0.0 -1.9
carbon source Azelaic (C) -0.1 -2.1 -0.1 -0.0 -1.1
phage PHYTO3 MOI 0.1 -0.2 -0.8 +0.5 -0.3 -2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -2.2 +0.3 -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -2.2 -0.2 +0.6 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -2.0 -0.0 +0.8 -1.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.8 -2.3 +0.1 +0.2 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -2.4 -0.1 +0.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -2.0 -0.7 +0.4 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 -2.0 -0.3 +0.9 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -1.7 +0.9 -0.4 +0.3
phage 36hr PHYTO10 MOI 10 -0.0 +0.8 +0.4 +0.0 -2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -2.1 +0.7 +0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -2.0 +0.7 +0.2 +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.7 +0.6 +0.2 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.6 +1.1 +0.5 +0.4
nophagecontrol 36hr Phyto Lib Only -0.5 +1.4 +0.3 +0.8 +0.5
phage 24hr PHYTO MOI 0.1 -0.3 +1.3 +0.1 +0.3 +1.2
phage 24hr PHYTO7 MOI 1 -0.0 +1.2 -0.2 +0.9 +1.1
phage 36hr PHYTO3 MOI 0.1 -0.2 +1.6 +0.4 +0.2 +0.9
phage 36hr PHYTO1 MOI 1 -0.2 +1.5 +0.5 -0.1 +1.5
phage 36hr PHYTO8 MOI 10 -0.2 +1.1 +0.0 +0.5 +2.0
nophagecontrol 36hr Phyto Lib only +0.1 +1.8 +0.2 +0.4 +0.9
phage 36hr PHYTO3 MOI 1 +0.1 +1.3 +0.3 +0.7 +1.2
phage 24hr PHYTO7 MOI 10 +0.1 +2.7 +0.5 +0.3 +0.8
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BPHYT_RS06370
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BPHYT_RS06375
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