Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06365	BPHYT_RS06370	BPHYT_RS06375	BPHYT_RS06380	BPHYT_RS06385
carbon source	propionate (C)	+0.1	+0.2	-3.6	+0.2	-0.1
vitamin	No vitamins t2	+0.1	-0.3	-3.0	-0.1	+0.2
vitamin	With vitamins t2	-0.0	+0.0	-2.7	-0.0	-0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.1	+0.0	-2.1	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	-2.0	-0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.3	-2.2	+0.3	-0.2
stress	A22 0.005 mg/ml	+0.1	+0.0	-2.7	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.2	-1.4	+0.3	-0.7
carbon source	D-Glucose (C)	-0.2	+0.2	-2.0	-0.3	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	-2.4	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.4	-2.3	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.2	-2.5	-0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.2	-2.4	-0.1	+0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.4	-1.8	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	-2.2	-0.2	+0.6
carbon source	D-Gluconic Acid (C)	+0.4	+0.2	-2.2	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-0.2	-1.7	+0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.2	-2.1	+0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	-0.1	-2.0	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	-2.0	+0.7	+0.2
motility	outer cut, LB soft agar motility assay	+0.1	+0.3	-2.0	-0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.0	-1.9	+0.2	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-2.0	-0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	-1.6	-0.1	+0.6
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	+0.8	-2.3	+0.1	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.5	-1.1	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.2	-1.5	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.3	-1.6	+1.1	+0.5
nophagecontrol	36hr Phyto Lib Only	-0.1	-0.5	+1.4	+0.3	+0.8
phage	24hr PHYTO7 MOI 10	-0.1	+0.1	+2.7	+0.5	+0.3