Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06285	BPHYT_RS06290	BPHYT_RS06295	BPHYT_RS06300	BPHYT_RS06305
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	-0.4	+0.0	N.D.	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.0	+0.0	+0.1	N.D.	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-1.0	-0.1	N.D.	-0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-1.3	-0.1	+0.1	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.9	+0.2	+0.3	N.D.	-0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.8	-0.3	-0.3	N.D.	+0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.2	+0.5	+0.4	N.D.	+0.0
nophagecontrol	36hr Phyto Lib only	-0.6	+0.2	-0.3	N.D.	+0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.7	-0.3	+0.0	N.D.	+0.8
phage	24hr PHYTO3 MOI 10	+0.2	-0.3	-0.6	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-0.4	-0.6	N.D.	-0.0
phage	36hr PHYTO4 MOI 0.1	+0.1	-0.6	-0.2	N.D.	+0.7
nophagecontrol	24hr Phyto Lib Only	-0.4	+0.4	-0.5	N.D.	+0.5
phage	36hr PHYTO10 MOI 1	+0.3	+0.1	-0.7	N.D.	+0.6
phage	24hr PHYTO1 MOI 10	+0.2	+0.4	-0.8	N.D.	+0.5
carbon source	L-Fucose (C)	+0.5	+0.6	-0.7	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.5	+0.3	N.D.	+0.4
nitrogen source	L-Serine (N)	-0.4	+0.8	+0.3	N.D.	+0.3
phage	36hr PHYTO3 MOI 1	-0.3	+0.6	-0.1	N.D.	+0.8
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+1.5	-0.1	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.2	+0.7	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	+1.0	-0.4	N.D.	+0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.7	+0.7	-0.3	N.D.	+0.5
carbon source	adipate (C)	+0.6	+0.4	-0.0	N.D.	+0.7
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.6	-0.0	N.D.	-0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.6	+0.4	+0.3	N.D.	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.2	+0.1	N.D.	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.5	+0.6	-0.1	N.D.	+1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+1.8	+0.7	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+3.6	-0.1	N.D.	+3.4