Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06280 and BPHYT_RS06285 are separated by 178 nucleotidesBPHYT_RS06285 and BPHYT_RS06290 are separated by 49 nucleotidesBPHYT_RS06290 and BPHYT_RS06295 are separated by 214 nucleotidesBPHYT_RS06295 and BPHYT_RS06300 are separated by 57 nucleotides BPHYT_RS06280: BPHYT_RS06280 - transporter, at 1,432,952 to 1,433,377 _RS06280 BPHYT_RS06285: BPHYT_RS06285 - diguanylate cyclase, at 1,433,556 to 1,434,056 _RS06285 BPHYT_RS06290: BPHYT_RS06290 - hypothetical protein, at 1,434,106 to 1,434,465 _RS06290 BPHYT_RS06295: BPHYT_RS06295 - diguanylate phosphodiesterase, at 1,434,680 to 1,436,377 _RS06295 BPHYT_RS06300: BPHYT_RS06300 - hypothetical protein, at 1,436,435 to 1,436,650 _RS06300
Group Condition BPHYT_RS06280 BPHYT_RS06285 BPHYT_RS06290 BPHYT_RS06295 BPHYT_RS06300
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 -1.0 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.8 -0.3 -0.3 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -1.3 -0.1 +0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -0.4 -0.3 -0.5 N.D.
nitrogen source Putrescine (N) N.D. -0.8 +0.2 -0.3 N.D.
nophagecontrol 24hr Phyto Lib Only N.D. -0.4 +0.4 -0.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.9 +0.2 +0.3 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -1.2 +0.5 +0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. -0.8 +0.3 +0.3 N.D.
phage 24hr PHYTO1 MOI 10 N.D. +0.2 +0.4 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.9 -0.4 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.6 +0.5 +0.3 N.D.
phage 36hr PHYTO1 MOI 1 N.D. +0.4 +0.5 -0.4 N.D.
carbon source L-Fucose (C) N.D. +0.5 +0.6 -0.7 N.D.
nitrogen source L-Serine (N) N.D. -0.4 +0.8 +0.3 N.D.
nophagecontrol 24hr Phyto Lib only N.D. +0.7 +0.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. +0.2 +1.0 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. +0.5 +0.6 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.7 +0.7 -0.3 N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.6 +0.4 +0.3 N.D.
carbon source Azelaic (C) N.D. +0.6 +0.2 +0.4 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. -0.0 +0.6 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.7 -0.2 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.3 +0.5 +0.4 N.D.
phage 36hr PHYTO11 MOI 1 N.D. +0.5 +0.6 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.6 +0.1 +0.7 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +1.5 -0.1 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 +1.6 -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 +1.8 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 +3.6 -0.1 N.D.
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