Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06110 and BPHYT_RS06115 are separated by 206 nucleotidesBPHYT_RS06115 and BPHYT_RS06120 are separated by 263 nucleotidesBPHYT_RS06120 and BPHYT_RS06125 are separated by 253 nucleotidesBPHYT_RS06125 and BPHYT_RS06130 are separated by 136 nucleotides BPHYT_RS06110: BPHYT_RS06110 - 3-carboxymuconate cyclase, at 1,388,561 to 1,389,718 _RS06110 BPHYT_RS06115: BPHYT_RS06115 - cell division protein FtsK, at 1,389,925 to 1,394,382 _RS06115 BPHYT_RS06120: BPHYT_RS06120 - heat-shock protein, at 1,394,646 to 1,395,197 _RS06120 BPHYT_RS06125: BPHYT_RS06125 - phosphoribosylglycinamide formyltransferase, at 1,395,451 to 1,396,665 _RS06125 BPHYT_RS06130: BPHYT_RS06130 - hypothetical protein, at 1,396,802 to 1,397,014 _RS06130
Group Condition BPHYT_RS06110 BPHYT_RS06115 BPHYT_RS06120 BPHYT_RS06125 BPHYT_RS06130
nophagecontrol 36hr Phyto Lib only -0.3 -1.0 -1.6 -0.0 N.D.
phage P. phyto PHYTO2 MOI 0.1 -0.3 -0.7 -1.3 -0.1 N.D.
phage 36hr PHYTO2 MOI 1 -0.1 -0.5 -1.4 -0.3 N.D.
phage 36hr PHYTO MOI 0.1 -0.3 -0.7 -0.8 -0.4 N.D.
phage 24hr PHYTO3 MOI 1 -0.0 -0.5 -1.2 -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.3 +0.1 -1.2 -0.6 N.D.
phage 36hr PHYTO9 MOI 1 -0.1 -0.6 -0.7 -0.5 N.D.
phage 24hr PHYTO4 MOI 10 -0.2 -0.5 -1.0 -0.3 N.D.
phage 24hr PHYTO2 MOI 1 -0.2 -0.5 -1.1 -0.1 N.D.
phage 24hr PHYTO3 MOI 10 +0.1 -0.4 -1.4 -0.1 N.D.
phage 36hr PHYTO7 MOI 1 -0.2 -0.5 -1.0 -0.2 N.D.
phage 36hr PHYTO1 MOI 1 -0.2 -0.1 -1.1 -0.4 N.D.
phage P. phyto PHYTO2 MOI 1 -0.4 -0.3 -0.8 -0.2 N.D.
carbon source D-Lactate (C) -0.5 -0.4 -0.4 -0.4 N.D.
nophagecontrol 36hr Phyto Lib only +0.2 -0.8 -0.8 -0.2 N.D.
phage 24hr PHYTO6 MOI 10 +0.2 -0.0 -1.7 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.5 +0.1 -1.0 -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.1 -0.9 -0.3 N.D.
phage 36hr PHYTO10 MOI 10 +0.2 -0.2 -1.4 +0.0 N.D.
phage 36hr PHYTO2 MOI 0.1 +0.2 -0.6 -0.6 -0.3 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.3 +0.1 -1.2 +0.1 N.D.
carbon source Malonic (C) +0.5 -0.2 -0.9 -0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.3 -0.6 +0.8 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.7 +0.1 +1.1 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.2 +1.2 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.4 +1.0 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.0 +1.5 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +0.0 +1.8 +0.1 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.1 +1.5 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.1 +2.0 +0.4 N.D.
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