Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS06105	BPHYT_RS06110	BPHYT_RS06115	BPHYT_RS06120	BPHYT_RS06125
phage	36hr PHYTO2 MOI 1	-1.4	-0.1	-0.5	-1.4	-0.3
phage	24hr PHYTO2 MOI 1	-1.5	-0.2	-0.5	-1.1	-0.1
nophagecontrol	36hr Phyto Lib only	-0.4	-0.3	-1.0	-1.6	-0.0
phage	24hr PHYTO MOI 0.1	-2.1	+0.1	-0.6	-0.4	-0.2
phage	36hr PHYTO8 MOI 0.1	-2.1	+0.1	-0.9	+0.1	-0.4
carbon source	Sebacic (C)	-2.2	+0.1	-0.4	-0.3	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.9	-0.3	+0.1	-1.2	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-1.2	-0.5	+0.1	-1.0	-0.4
phage	36hr PHYTO MOI 0.1	-0.7	-0.3	-0.7	-0.8	-0.4
phage	36hr PHYTO6 MOI 0.1	-2.1	+0.1	-0.4	-0.4	+0.1
phage	P. phyto PHYTO2 MOI 1	-0.8	-0.4	-0.3	-0.8	-0.2
nophagecontrol	36hr Phyto Lib Only	-1.4	+0.1	-0.6	-0.3	-0.3
phage	36hr PHYTO9 MOI 1	-0.6	-0.1	-0.6	-0.7	-0.5
nitrogen source	L-Asparagine (N)	-2.5	+0.1	+0.2	-0.3	+0.2
phage	36hr PHYTO1 MOI 1	-1.0	+0.1	-0.6	-0.4	-0.3
nitrogen source	L-Citrulline (N)	-2.3	+0.0	+0.1	+0.1	+0.3
phage	P. phyto PHYTO2 MOI 0.1	+1.0	-0.3	-0.7	-1.3	-0.1
phage	24hr PHYTO3 MOI 10	+0.5	+0.1	-0.4	-1.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.8	+0.1	+0.4	+0.2	-0.2
nitrogen source	L-Isoleucine (N)	-1.6	-0.2	+0.0	+0.6	+0.5
phage	24hr PHYTO9 MOI 0.1	+1.1	-0.1	-0.6	-0.7	-0.1
motility	outer cut, LB soft agar motility assay	+0.8	+0.3	-0.0	-1.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.7	-0.3	-0.1	-0.9	-0.3
phage	36hr PHYTO11 MOI 0.1	+1.4	-0.0	-0.6	-0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.1	+0.0	+1.8	+0.1
pH	LB, pH4	+1.0	+0.1	-0.6	+0.8	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.6	-0.7	+0.1	+1.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.1	-0.1	+2.0	+0.4
motility	inner cut, LB soft agar motility assay	+2.1	+0.0	+0.2	-0.6	+0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+1.6	+0.0	+0.5	-0.4	+0.4