Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06065 and BPHYT_RS06070 are separated by 59 nucleotidesBPHYT_RS06070 and BPHYT_RS06075 are separated by 118 nucleotidesBPHYT_RS06075 and BPHYT_RS06080 are separated by 160 nucleotidesBPHYT_RS06080 and BPHYT_RS06085 are separated by 19 nucleotides BPHYT_RS06065: BPHYT_RS06065 - cytochrome C, at 1,379,957 to 1,380,325 _RS06065 BPHYT_RS06070: BPHYT_RS06070 - cytochrome C, at 1,380,385 to 1,380,768 _RS06070 BPHYT_RS06075: BPHYT_RS06075 - hypothetical protein, at 1,380,887 to 1,381,321 _RS06075 BPHYT_RS06080: BPHYT_RS06080 - endonuclease IV, at 1,381,482 to 1,382,126 _RS06080 BPHYT_RS06085: BPHYT_RS06085 - ferredoxin, at 1,382,146 to 1,382,985 _RS06085
Group Condition BPHYT_RS06065 BPHYT_RS06070 BPHYT_RS06075 BPHYT_RS06080 BPHYT_RS06085
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -6.6 -5.9 -2.2 -0.0 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -6.1 -4.7 -1.0 -0.5 +0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.7 -4.5 -2.3 +0.1 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -4.2 -4.4 -2.0 -0.2 -0.0
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -5.1 -4.0 -0.6 -0.3 -0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.7 -4.1 -2.7 +0.3 -0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -3.2 -4.5 -1.9 +0.3 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.9 -2.6 -3.3 -0.7 +0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.0 -3.3 -2.4 +0.1 +0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -3.6 -3.8 -1.4 +0.1 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.7 -2.4 -3.4 -0.3 -0.0
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.7 -3.2 -1.6 +0.5 -0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -3.4 -4.0 -1.2 +0.3 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.3 -2.6 -2.2 -0.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -3.6 -2.3 -2.8 +0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -2.3 -2.1 -2.9 -0.6 +0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.0 -2.9 -1.4 -0.0 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.5 -1.6 -2.1 -0.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -1.2 -1.3 -2.5 -0.7 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 -2.3 -0.8 -0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -1.2 -2.0 +0.5 -1.0
nitrogen source Carnitine Hydrochloride (N) -1.8 -2.1 -1.4 -0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.7 -1.9 -1.9 +0.3 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.5 -1.5 -2.0 -0.1 +0.8
carbon source Malonic (C) -1.4 -1.7 -1.7 +0.3 +0.7
phage 36hr PHYTO2 MOI 1 +1.1 +1.2 +2.0 -1.1 -0.1
phage 24hr PHYTO4 MOI 0.1 +1.3 +1.1 +2.2 -0.5 +0.4
nophagecontrol 24hr Phyto Lib Only +1.3 +1.2 +2.2 -0.3 +0.6
phage 36hr PHYTO3 MOI 1 +1.1 +1.2 +2.7 -0.3 +0.7
phage 24hr PHYTO3 MOI 10 +1.3 +1.4 +2.4 +0.6 +0.4
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BPHYT_RS06065
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BPHYT_RS06070
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BPHYT_RS06080
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BPHYT_RS06085
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