Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS06055 and BPHYT_RS06060 are separated by 141 nucleotidesBPHYT_RS06060 and BPHYT_RS06065 are separated by 481 nucleotidesBPHYT_RS06065 and BPHYT_RS06070 are separated by 59 nucleotidesBPHYT_RS06070 and BPHYT_RS06075 are separated by 118 nucleotides BPHYT_RS06055: BPHYT_RS06055 - von Willebrand factor A, at 1,377,316 to 1,378,491 _RS06055 BPHYT_RS06060: BPHYT_RS06060 - ATPase AAA, at 1,378,633 to 1,379,475 _RS06060 BPHYT_RS06065: BPHYT_RS06065 - cytochrome C, at 1,379,957 to 1,380,325 _RS06065 BPHYT_RS06070: BPHYT_RS06070 - cytochrome C, at 1,380,385 to 1,380,768 _RS06070 BPHYT_RS06075: BPHYT_RS06075 - hypothetical protein, at 1,380,887 to 1,381,321 _RS06075
Group Condition BPHYT_RS06055 BPHYT_RS06060 BPHYT_RS06065 BPHYT_RS06070 BPHYT_RS06075
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.6 +0.2 -6.6 -5.9 -2.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.3 +0.8 -6.1 -4.7 -1.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.2 -4.7 -4.5 -2.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.1 -4.2 -4.4 -2.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.0 -3.7 -4.1 -2.7
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.1 -0.0 -5.1 -4.0 -0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.1 -4.0 -3.3 -2.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.7 -3.2 -4.5 -1.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 +0.1 -2.9 -2.6 -3.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 -3.6 -3.8 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.0 +0.1 -3.6 -2.3 -2.8
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.0 -3.7 -3.2 -1.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.3 -2.7 -2.4 -3.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.8 -3.4 -4.0 -1.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.1 -3.0 -2.9 -1.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -0.3 -2.3 -2.6 -2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.0 -0.0 -2.3 -2.1 -2.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.2 +0.1 -1.7 -1.9 -1.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.6 -1.6 -1.2 -2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.2 -2.1 -2.3 -0.8
nitrogen source Carnitine Hydrochloride (N) +0.1 +0.1 -1.8 -2.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 +0.2 -1.5 -1.5 -2.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.0 -1.5 -1.6 -2.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 +0.3 -1.8 -1.7 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.3 +0.3 -1.2 -1.3 -2.5
nitrogen source L-Alanine (N) +0.2 -0.3 -1.3 -1.6 -1.8
phage 24hr PHYTO3 MOI 1 -0.5 -0.2 +1.3 +1.2 +2.4
phage 24hr PHYTO3 MOI 10 -0.2 +0.5 +1.0 +1.3 +2.4
phage 24hr PHYTO3 MOI 10 -0.4 +0.4 +1.3 +1.4 +2.4
phage 36hr PHYTO3 MOI 1 -0.1 +0.4 +1.1 +1.2 +2.7
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BPHYT_RS06055
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BPHYT_RS06060
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BPHYT_RS06070
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BPHYT_RS06075
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