Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS06045	BPHYT_RS06050	BPHYT_RS06055	BPHYT_RS06060	BPHYT_RS06065
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-3.2	+0.3	-0.3	+0.8	-6.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.7	-0.3	+0.6	+0.2	-6.6
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-3.4	+0.4	-0.0	+0.1	-3.6
nitrogen source	Ammonium chloride (N)	-4.3	-0.3	-0.0	-0.3	-1.5
nitrogen source	Carnitine Hydrochloride (N)	-4.6	+0.2	+0.1	+0.1	-1.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-3.0	-0.1	-0.1	-0.3	-2.3
supernatant control	Vogels_fungal_media; pH 5.5	-4.0	-0.4	-0.5	-0.1	-0.8
nitrogen source	L-Alanine (N)	-4.0	-0.2	+0.2	-0.3	-1.3
nitrogen source	L-Glutamine (N)	-4.5	+0.1	+0.3	-0.2	-1.1
carbon source	D-Gluconic Acid (C)	-4.3	-0.1	-0.3	-0.2	-0.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.6	+0.4	-0.1	-0.0	-5.1
nitrogen source	Uridine (N)	-4.8	+0.1	+0.3	+0.1	-1.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-2.0	+0.1	-0.3	+0.1	-2.9
nitrogen source	L-Lysine (N)	-4.1	-0.3	-0.1	+0.1	-0.6
nitrogen source	L-Proline (N)	-4.5	-0.3	+0.4	+0.2	-0.8
nitrogen source	L-Asparagine (N)	-3.8	-0.0	+0.3	-0.1	-1.2
vitamin	With vitamins t2	-3.7	-0.1	+0.1	+0.3	-1.3
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.0	+0.2	+0.2	-4.7
nitrogen source	L-Glutamic (N)	-4.1	+0.2	+0.5	-0.1	-1.2
nitrogen source	D-Alanine (N)	-4.4	+0.1	+0.2	+0.1	-0.8
nitrogen source	NAG (N)	-4.0	-0.1	+0.3	-0.2	-0.5
nutrient	L-Histidine	-4.2	+0.0	-0.1	+0.4	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-4.6	+0.2	-0.2	+0.4	-0.4
nutrient	Min media with glucose	-3.8	-0.3	+0.1	+0.2	-0.8
nitrogen source	L-Citrulline (N)	-4.1	-0.1	+0.2	+0.1	-0.7
vitamin	No vitamins t2	-3.8	+0.2	+0.2	+0.3	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-3.1	+0.3	-0.3	+0.2	-1.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-2.0	+0.2	+0.1	+0.3	-2.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.7	-0.2	+0.8	-3.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.6	-0.3	+0.7	-3.2