Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05935 and BPHYT_RS05940 are separated by 273 nucleotidesBPHYT_RS05940 and BPHYT_RS05945 are separated by 103 nucleotidesBPHYT_RS05945 and BPHYT_RS05950 are separated by 165 nucleotidesBPHYT_RS05950 and BPHYT_RS05955 are separated by 493 nucleotides BPHYT_RS05935: BPHYT_RS05935 - DNA topoisomerase IV subunit A, at 1,348,030 to 1,350,354 _RS05935 BPHYT_RS05940: BPHYT_RS05940 - membrane protein, at 1,350,628 to 1,351,086 _RS05940 BPHYT_RS05945: BPHYT_RS05945 - chromate transporter, at 1,351,190 to 1,352,398 _RS05945 BPHYT_RS05950: BPHYT_RS05950 - dGTP triphosphohydrolase, at 1,352,564 to 1,354,918 _RS05950 BPHYT_RS05955: BPHYT_RS05955 - hypothetical protein, at 1,355,412 to 1,356,302 _RS05955
Group Condition BPHYT_RS05935 BPHYT_RS05940 BPHYT_RS05945 BPHYT_RS05950 BPHYT_RS05955
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. -1.3 +0.3 -0.2 -1.0
phage 36hr PHYTO8 MOI 10 N.D. -1.6 +0.1 +0.1 -0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.6 -0.1 -0.2 -0.1
phage 24hr PHYTO3 MOI 1 N.D. -1.7 +0.2 -0.1 -0.4
phage 24hr PHYTO1 MOI 10 N.D. -1.6 +0.1 +0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.9 -0.5 +0.0 -0.3
phage P. phyto PHYTO2 MOI 0.1 N.D. -1.1 +0.2 -0.1 -0.5
phage P. phyto PHYTO2 MOI 1 N.D. -0.5 +0.1 -0.2 -0.9
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. -1.2 -0.1 -0.0 +0.1
carbon source Phenylacetic 5 mM (C) N.D. +0.2 -0.4 -0.1 -0.7
phage 24hr PHYTO10 MOI 1 N.D. -1.1 +0.3 -0.1 -0.2
phage 24hr PHYTO MOI 0.1 N.D. -0.9 +0.2 +0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.2 +0.3 +0.0 -0.1
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 N.D. -0.9 -0.3 +0.1 +0.3
carbon source D-Xylose (C) N.D. -0.3 +0.4 -0.8 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 +0.4 -0.2 +0.0
phage 24hr PHYTO6 MOI 10 N.D. -0.3 +0.5 +0.1 -0.7
stress A22 0.005 mg/ml N.D. -0.7 -0.2 -0.0 +0.6
phage 36hr PHYTO6 MOI 10 N.D. +0.6 -0.1 -0.2 -0.6
phage 24hr PHYTO3 MOI 10 N.D. +0.5 +0.4 -0.1 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.0 +1.0 +0.2 -0.7
phage 36hr PHYTO11 MOI 0.1 N.D. +0.7 +0.3 -0.0 -0.4
phage 24hr PHYTO4 MOI 10 N.D. +0.8 +0.4 +0.1 -0.6
phage 36hr PHYTO4 MOI 1 N.D. +0.4 +0.7 +0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. +0.2 +1.1 +0.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.3 +0.4 +0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. +0.3 +0.7 +0.2 -0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.7 +0.3 +0.2 -0.3
phage 24hr PHYTO6 MOI 1 N.D. +0.9 +0.5 -0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.8 +0.3 -0.2 +0.5
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