Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05910 and BPHYT_RS05915 are separated by 446 nucleotidesBPHYT_RS05915 and BPHYT_RS05920 are separated by 325 nucleotidesBPHYT_RS05920 and BPHYT_RS05925 are separated by 180 nucleotidesBPHYT_RS05925 and BPHYT_RS05930 are separated by 356 nucleotides BPHYT_RS05910: BPHYT_RS05910 - hypothetical protein, at 1,341,693 to 1,342,115 _RS05910 BPHYT_RS05915: BPHYT_RS05915 - rubredoxin, at 1,342,562 to 1,342,753 _RS05915 BPHYT_RS05920: BPHYT_RS05920 - rod shape-determining protein RodA, at 1,343,079 to 1,343,480 _RS05920 BPHYT_RS05925: BPHYT_RS05925 - ABC transporter ATP-binding protein, at 1,343,661 to 1,345,607 _RS05925 BPHYT_RS05930: BPHYT_RS05930 - DNA topoisomerase IV subunit B, at 1,345,964 to 1,347,949 _RS05930
Group Condition BPHYT_RS05910 BPHYT_RS05915 BPHYT_RS05920 BPHYT_RS05925 BPHYT_RS05930
carbon source Phenylacetic 5 mM (C) -1.2 -0.8 -0.2 -0.1 N.D.
carbon source Suberic (C) -1.4 -0.2 -0.3 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -0.1 +0.0 -0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.1 -0.3 -0.9 N.D.
carbon source D-Glucose 20 mM (C) -0.7 -0.0 -0.6 -0.6 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.0 +0.5 -1.0 -0.0 N.D.
nitrogen source L-Glutamic (N) -1.5 -0.6 -0.0 +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.4 -0.5 -0.7 N.D.
supernatant control Vogels_fungal_media 0.1X +0.4 -0.3 -0.4 -1.0 N.D.
phage 36hr PHYTO6 MOI 0.1 -0.8 +0.3 -0.8 +0.2 N.D.
nophagecontrol 36hr Phyto Lib Only +0.4 -0.3 -0.7 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -0.9 -0.3 -0.3 N.D.
phage 24hr PHYTO3 MOI 1 -0.3 +0.3 -1.3 +0.4 N.D.
phage 24hr PHYTO2 MOI 1 -0.2 +0.2 -1.2 +0.5 N.D.
phage 24hr PHYTO10 MOI 10 -1.1 +0.4 -0.2 +0.2 N.D.
carbon source Tween 20 (C) -1.0 +0.5 +0.3 -0.5 N.D.
phage 36hr PHYTO6 MOI 1 -0.1 +0.3 -1.4 +0.6 N.D.
phage 36hr PHYTO11 MOI 0.1 +0.6 +0.1 -1.3 -0.1 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.7 -0.3 -0.5 +1.0 N.D.
vitamin With vitamins t1 -1.2 +0.5 +0.2 -0.0 N.D.
phage 36hr PHYTO10 MOI 10 -0.2 +0.6 -1.0 +0.2 N.D.
phage 24hr PHYTO4 MOI 10 -0.6 +0.6 -0.4 +0.4 N.D.
carbon source Malonic (C) -0.6 +1.0 -0.4 +0.3 N.D.
phage 24hr PHYTO6 MOI 0.1 +0.3 +0.7 -0.9 +0.3 N.D.
phage 24hr PHYTO6 MOI 10 -0.2 +0.6 -0.9 +0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +1.0 -0.2 +0.5 N.D.
phage 24hr PHYTO2 MOI 0.1 +0.7 +0.5 -0.6 +0.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.9 -0.3 +0.4 +0.7 N.D.
temperature LB, 37C +1.1 +0.2 -0.2 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +0.2 +0.2 +0.1 N.D.
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