Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05870 and BPHYT_RS05875 are separated by 245 nucleotidesBPHYT_RS05875 and BPHYT_RS05880 are separated by 315 nucleotidesBPHYT_RS05880 and BPHYT_RS05885 are separated by 1440 nucleotidesBPHYT_RS05885 and BPHYT_RS05890 are separated by 184 nucleotides BPHYT_RS05870: BPHYT_RS05870 - hypothetical protein, at 1,333,557 to 1,333,856 _RS05870 BPHYT_RS05875: BPHYT_RS05875 - acyltransferase, at 1,334,102 to 1,335,166 _RS05875 BPHYT_RS05880: BPHYT_RS05880 - hypothetical protein, at 1,335,482 to 1,335,673 _RS05880 BPHYT_RS05885: BPHYT_RS05885 - hypothetical protein, at 1,337,114 to 1,337,332 _RS05885 BPHYT_RS05890: BPHYT_RS05890 - hypothetical protein, at 1,337,517 to 1,337,828 _RS05890
Group Condition BPHYT_RS05870 BPHYT_RS05875 BPHYT_RS05880 BPHYT_RS05885 BPHYT_RS05890
phage 36hr PHYTO2 MOI 1 -1.3 +0.1 -1.0 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.4 -0.5 -1.0 N.D. N.D.
phage PHYTO3 MOI 0.1 -1.7 -0.0 +0.1 N.D. N.D.
nitrogen source L-Serine (N) -0.2 -0.1 -1.2 N.D. N.D.
carbon source D-Glucose 20 mM (C) -0.2 +0.1 -1.3 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.0 -0.5 -0.1 N.D. N.D.
phage 36hr PHYTO7 MOI 1 -1.8 +0.1 +0.4 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -1.6 +0.1 +0.2 N.D. N.D.
no phage control No phage control -1.6 +0.1 +0.2 N.D. N.D.
phage 24hr PHYTO3 MOI 10 -0.5 +0.4 -1.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.4 -0.7 N.D. N.D.
phage P. phyto corn MOI 1 -1.0 -0.3 +0.6 N.D. N.D.
phage 24hr PHYTO1 MOI 10 +0.2 +0.2 -1.0 N.D. N.D.
carbon source D-Galacturonic Acid (C) +0.5 -0.1 -0.9 N.D. N.D.
phage 24hr PHYTO6 MOI 1 -0.5 +0.6 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.3 +0.5 N.D. N.D.
nitrogen source L-Glutamic (N) +0.7 +0.0 -1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 +0.0 +0.7 N.D. N.D.
phage 36hr PHYTO8 MOI 0.1 -0.8 -0.4 +0.9 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 +0.6 -1.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.3 -0.7 N.D. N.D.
phage 36hr PHYTO9 MOI 1 -0.6 -0.0 +0.9 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 -0.7 +0.2 +0.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.3 -0.2 +1.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +0.1 +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.9 -0.2 +1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.5 -0.2 +1.6 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.3 -0.1 +1.7 N.D. N.D.
carbon source Malonic (C) +0.8 -0.1 +1.3 N.D. N.D.
motility inner cut, LB soft agar motility assay +0.6 +0.3 +1.1 N.D. N.D.
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BPHYT_RS05870
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BPHYT_RS05875
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