Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05860 and BPHYT_RS05865 are separated by 2 nucleotidesBPHYT_RS05865 and BPHYT_RS05870 are separated by 138 nucleotidesBPHYT_RS05870 and BPHYT_RS05875 are separated by 245 nucleotidesBPHYT_RS05875 and BPHYT_RS05880 are separated by 315 nucleotides BPHYT_RS05860: BPHYT_RS05860 - ATP-binding protein, at 1,331,101 to 1,331,889 _RS05860 BPHYT_RS05865: BPHYT_RS05865 - integrase, at 1,331,892 to 1,333,418 _RS05865 BPHYT_RS05870: BPHYT_RS05870 - hypothetical protein, at 1,333,557 to 1,333,856 _RS05870 BPHYT_RS05875: BPHYT_RS05875 - acyltransferase, at 1,334,102 to 1,335,166 _RS05875 BPHYT_RS05880: BPHYT_RS05880 - hypothetical protein, at 1,335,482 to 1,335,673 _RS05880
Group Condition BPHYT_RS05860 BPHYT_RS05865 BPHYT_RS05870 BPHYT_RS05875 BPHYT_RS05880
phage 36hr PHYTO2 MOI 1 N.D. N.D. -1.3 +0.1 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. -0.4 -0.5 -1.0
phage PHYTO3 MOI 0.1 N.D. N.D. -1.7 -0.0 +0.1
nitrogen source L-Serine (N) N.D. N.D. -0.2 -0.1 -1.2
carbon source D-Glucose 20 mM (C) N.D. N.D. -0.2 +0.1 -1.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.0 -0.5 -0.1
phage 36hr PHYTO7 MOI 1 N.D. N.D. -1.8 +0.1 +0.4
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -1.6 +0.1 +0.2
no phage control No phage control N.D. N.D. -1.6 +0.1 +0.2
phage 24hr PHYTO3 MOI 10 N.D. N.D. -0.5 +0.4 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.4 +0.4 -0.7
phage P. phyto corn MOI 1 N.D. N.D. -1.0 -0.3 +0.6
phage 24hr PHYTO1 MOI 10 N.D. N.D. +0.2 +0.2 -1.0
carbon source D-Galacturonic Acid (C) N.D. N.D. +0.5 -0.1 -0.9
phage 24hr PHYTO6 MOI 1 N.D. N.D. -0.5 +0.6 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.6 -0.3 +0.5
nitrogen source L-Glutamic (N) N.D. N.D. +0.7 +0.0 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -1.1 +0.0 +0.7
phage 36hr PHYTO8 MOI 0.1 N.D. N.D. -0.8 -0.4 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. +0.6 +0.6 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.6 +0.3 -0.7
phage 36hr PHYTO9 MOI 1 N.D. N.D. -0.6 -0.0 +0.9
phage 36hr PHYTO11 MOI 0.1 N.D. N.D. -0.7 +0.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. +0.3 -0.2 +1.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +1.0 +0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +0.9 -0.2 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. +0.5 -0.2 +1.6
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. +0.3 -0.1 +1.7
carbon source Malonic (C) N.D. N.D. +0.8 -0.1 +1.3
motility inner cut, LB soft agar motility assay N.D. N.D. +0.6 +0.3 +1.1
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