Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS05810	BPHYT_RS05815	BPHYT_RS05820	BPHYT_RS05825	BPHYT_RS05830
phage	24hr PHYTO1 MOI 10	-1.3	+0.0	+0.0	-2.5	-0.4
phage	24hr PHYTO3 MOI 10	-0.3	-0.1	-0.4	-2.7	-0.0
nophagecontrol	24hr Phyto Lib Only	-0.4	-0.0	-0.0	-2.6	-0.4
phage	P. phyto corn MOI 1	-1.4	-0.2	-0.3	-1.1	-0.3
phage	36hr PHYTO10 MOI 10	-0.1	-0.6	-0.4	-1.6	-0.6
phage	24hr PHYTO2 MOI 0.1	-0.2	-0.0	-0.1	-2.1	-0.7
phage	36hr PHYTO1 MOI 1	-0.8	-0.3	-0.3	-1.2	-0.6
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.0	-0.4	+0.2	-2.9	+0.2
phage	36hr PHYTO11 MOI 0.1	-1.1	-0.2	-0.2	-0.6	-0.5
phage	36hr PHYTO10 MOI 1	-0.8	-0.0	-0.2	-1.1	-0.5
phage	24hr PHYTO6 MOI 10	-0.0	-0.8	+0.1	-1.4	-0.3
phage	36hr PHYTO8 MOI 0.1	+0.2	-0.6	-0.2	-1.9	-0.1
phage	24hr PHYTO3 MOI 10	-0.7	-0.4	-0.1	-0.6	-0.8
phage	24hr PHYTO10 MOI 1	-0.9	-0.1	-0.2	-0.7	-0.6
phage	24hr PHYTO6 MOI 0.1	-0.6	+0.0	-0.2	-1.4	-0.3
carbon source	Suberic (C)	-1.3	-0.4	-0.3	-0.6	+0.2
carbon source	Protocatechuic Acid (C)	-0.5	-0.2	-0.5	-1.0	+0.3
phage	36hr PHYTO10 MOI 10	+0.6	-0.1	+0.2	-1.8	-0.5
phage	36hr PHYTO1 MOI 1	-0.8	-0.4	-0.2	+0.5	-0.7
phage	P. phyto PHYTO2 MOI 1	+0.5	-0.0	-0.1	-1.4	-0.5
nophagecontrol	24hr Phyto Lib only	+0.5	-0.3	+0.1	-1.6	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-1.1	-0.2	+0.2	-0.5	+0.7
phage	36hr PHYTO8 MOI 10	+0.4	-0.4	-0.3	+0.6	-1.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.5	-0.1	-1.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.4	+0.9	-0.1	-0.5	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.9	-0.4	-0.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.2	+0.5	-0.2	-0.9	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.6	+0.3	+0.4	+1.5	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	+0.4	+0.4	+1.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.0	+0.3	+1.0	+2.4	+0.1