Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS05790	BPHYT_RS05795	BPHYT_RS05800	BPHYT_RS05805	BPHYT_RS05810
phage	P. phyto corn MOI 1	-0.7	-0.3	+0.1	-0.3	-1.4
phage	24hr PHYTO9 MOI 0.1	-0.6	+0.0	-0.5	-0.1	-1.2
phage	24hr PHYTO3 MOI 10	-0.4	-0.8	+0.3	-0.1	-0.7
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.4	-0.4	+0.2	+0.1	-1.1
phage	24hr PHYTO3 MOI 10	-1.0	-0.5	+0.5	+0.0	-0.3
carbon source	Phenylacetic 5 mM (C)	-0.4	-0.2	-1.3	-0.1	+0.6
phage	36hr PHYTO10 MOI 1	-0.4	+0.8	-0.9	+0.0	-0.8
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.2	-0.8	-0.9	+0.1	+0.7
nophagecontrol	36hr Phyto Lib only	-1.2	+0.3	-0.2	-0.2	+0.2
phage	PHYTO3 MOI 0.1	-0.2	-0.4	+0.9	-0.1	-1.2
phage	24hr PHYTO11 MOI 1	-0.1	+0.9	-0.1	-0.0	-1.2
carbon source	propionate (C)	-0.4	+0.8	-0.1	+0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.8	+0.1	+0.1	-1.0
phage	24hr PHYTO7 MOI 1	-0.5	+0.7	-0.4	+0.3	-0.2
phage	36hr PHYTO11 MOI 0.1	-0.5	-0.4	+0.8	-0.2	+0.3
carbon source	adipate (C)	-0.5	+0.8	+0.7	+0.0	-1.1
carbon source	succinate (C)	+0.0	+0.7	+0.4	-0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9	+0.6	+0.6	+0.2	-0.2
carbon source	Dodecandioic (C)	-0.2	+1.0	+0.6	-0.0	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+1.1	-0.4	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.1	-0.6	+0.2	+1.2
carbon source	D-Glucose (C)	-0.2	+0.7	+0.9	-0.1	-0.6
phage	36hr PHYTO4 MOI 1	-0.9	+0.8	+0.8	+0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.1	-0.5	+0.2	+1.0
carbon source	Suberic (C)	-0.3	+1.2	+1.3	+0.1	-1.3
phage	36hr PHYTO2 MOI 1	+0.3	+1.0	+0.6	+0.2	-0.9
carbon source	Sebacic (C)	+0.0	+0.9	+0.8	-0.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	+1.0	+0.2	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.5	-0.4	+0.7	-0.0	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+1.0	+0.1	-0.3	+0.5