Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS05620	BPHYT_RS05625	BPHYT_RS05630	BPHYT_RS05635	BPHYT_RS05640
phage	36hr PHYTO10 MOI 10	-1.6	-1.4	+0.2	-2.6	-0.2
phage	36hr PHYTO4 MOI 1	-3.9	-0.7	-0.2	-0.3	-0.4
phage	36hr PHYTO10 MOI 10	-1.7	+0.0	-0.5	-2.6	+0.1
phage	24hr PHYTO6 MOI 10	-3.9	-0.5	-0.0	-0.2	+0.2
phage	24hr PHYTO10 MOI 10	-1.0	-0.4	-0.1	-2.0	-0.3
phage	P. phyto PHYTO2 MOI 0.1	-2.2	-0.8	+0.1	+0.0	-0.3
nitrogen source	Ammonium chloride (N)	-2.4	-0.6	-0.2	+0.1	-0.1
carbon source	Suberic (C)	-2.5	-0.1	-0.2	+0.1	-0.3
phage	24hr PHYTO6 MOI 1	-2.6	-0.1	-0.0	-0.1	-0.3
phage	24hr PHYTO7 MOI 10	-1.1	-0.9	-0.6	+0.0	-0.3
motility	outer cut, LB soft agar motility assay	-1.3	-0.2	-0.5	-0.6	-0.3
nitrogen source	L-Serine (N)	-2.5	+0.2	-0.1	-0.1	-0.3
phage	36hr PHYTO6 MOI 1	-1.8	-0.7	-0.0	-0.0	-0.2
phage	24hr PHYTO4 MOI 10	-1.4	-0.2	-0.9	-0.4	+0.1
phage	24hr PHYTO10 MOI 1	-1.0	-1.2	+0.3	-0.6	-0.0
phage	36hr PHYTO3 MOI 0.1	-1.9	-0.4	+0.1	-0.1	-0.1
phage	36hr PHYTO1 MOI 1	-2.4	+0.2	+0.2	+0.0	-0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.9	-0.0	-0.5	+0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-2.1	-0.3	-0.1	-0.0	+0.3
phage	24hr PHYTO10 MOI 10	+0.2	-0.4	+0.2	-2.0	-0.1
phage	P. phyto PHYTO2 MOI 1	-2.2	+0.3	-0.1	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-1.0	+0.1	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.7	-0.1	-0.4	+0.2	+0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-1.6	-0.4	+0.3	+0.4	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	+0.5	+0.6	+0.1	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.5	+0.7	+0.3	+0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	+1.1	+0.7	-0.7	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+2.1	-0.2	-0.2	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+1.9	-0.3	-0.2	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.6	+0.6	-0.2	-0.1	+0.2