Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05470 and BPHYT_RS05475 are separated by 9 nucleotidesBPHYT_RS05475 and BPHYT_RS05480 are separated by 143 nucleotidesBPHYT_RS05480 and BPHYT_RS05485 are separated by 126 nucleotidesBPHYT_RS05485 and BPHYT_RS05490 are separated by 257 nucleotides BPHYT_RS05470: BPHYT_RS05470 - excinuclease ABC subunit C, at 1,256,906 to 1,257,235 _RS05470 BPHYT_RS05475: BPHYT_RS05475 - hypothetical protein, at 1,257,245 to 1,258,414 _RS05475 BPHYT_RS05480: BPHYT_RS05480 - NAD synthetase, at 1,258,558 to 1,260,258 _RS05480 BPHYT_RS05485: BPHYT_RS05485 - nitrogen regulatory protein P-II 1, at 1,260,385 to 1,260,723 _RS05485 BPHYT_RS05490: BPHYT_RS05490 - porin, at 1,260,981 to 1,262,132 _RS05490
Group Condition BPHYT_RS05470 BPHYT_RS05475 BPHYT_RS05480 BPHYT_RS05485 BPHYT_RS05490
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.2 +0.1 -2.0 -0.8
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.2 -0.6 +0.5 -0.3 -3.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -0.5 +0.1 -1.0 -1.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 -0.2 +0.2 -2.2 -0.6
phage 36hr PHYTO8 MOI 10 -0.3 +0.2 +0.4 -1.4 -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.4 -0.1 +0.2 -1.0 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.1 +0.3 -1.5 -1.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.3 +0.1 -0.8 -1.2
phage 24hr PHYTO3 MOI 10 +0.0 +0.2 -0.2 -1.8 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.2 +0.3 -1.0 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.1 +0.1 -1.2 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.3 +0.3 -1.4 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 +0.1 +0.2 -0.5 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.0 +0.3 -0.6 -1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -0.3 +0.3 -0.6 -1.3
phage 24hr PHYTO9 MOI 10 -0.5 -0.1 +0.4 -1.6 -0.2
phage 24hr PHYTO6 MOI 1 +0.1 -0.2 -0.4 +0.3 -1.7
vitamin With vitamins t2 +0.4 +0.1 -0.4 -0.8 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.2 +0.4 -0.5 -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.2 +0.3 -1.0 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 +0.1 +0.1 -0.7 -1.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.0 +0.2 +0.0 +0.6 -2.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 +0.1 +0.4 -0.2 -2.1
phage 24hr PHYTO8 MOI 1 +0.0 +0.2 +0.1 -2.0 +0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.1 +1.0 +0.1 -0.8 -1.3
phage P. phyto PHYTO2 MOI 1 +0.2 -0.5 +0.5 -0.1 -1.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.9 +0.0 -0.8 -1.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.2 +1.3 +0.3 -0.8 -0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.8 +0.1 -0.0 +0.2 -0.6
carbon source Protocatechuic Acid (C) +1.1 -0.3 +0.3 +0.8 +0.1
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BPHYT_RS05475
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