Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05440 and BPHYT_RS05445 overlap by 2 nucleotidesBPHYT_RS05445 and BPHYT_RS05450 are separated by 841 nucleotidesBPHYT_RS05450 and BPHYT_RS05455 are separated by 347 nucleotidesBPHYT_RS05455 and BPHYT_RS05460 are separated by 96 nucleotides BPHYT_RS05440: BPHYT_RS05440 - hypothetical protein, at 1,250,456 to 1,250,650 _RS05440 BPHYT_RS05445: BPHYT_RS05445 - hypothetical protein, at 1,250,649 to 1,250,831 _RS05445 BPHYT_RS05450: BPHYT_RS05450 - AraC family transcriptional regulator, at 1,251,673 to 1,252,074 _RS05450 BPHYT_RS05455: BPHYT_RS05455 - AraC family transcriptional regulator, at 1,252,422 to 1,253,267 _RS05455 BPHYT_RS05460: BPHYT_RS05460 - chloroperoxidase, at 1,253,364 to 1,254,194 _RS05460
Group Condition BPHYT_RS05440 BPHYT_RS05445 BPHYT_RS05450 BPHYT_RS05455 BPHYT_RS05460
phage 24hr PHYTO3 MOI 10 -2.5 N.D. N.D. +0.1 -0.9
phage PHYTO3 MOI 0.1 -1.1 N.D. N.D. -0.5 -1.0
phage 24hr PHYTO11 MOI 1 -0.1 N.D. N.D. -1.0 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 N.D. N.D. -1.1 -0.6
phage 36hr PHYTO7 MOI 1 -0.0 N.D. N.D. -0.9 -1.4
phage 36hr PHYTO11 MOI 0.1 -1.0 N.D. N.D. -0.9 -0.3
phage P. phyto PHYTO2 MOI 1 -0.1 N.D. N.D. -1.4 -0.8
phage 36hr PHYTO11 MOI 1 -0.8 N.D. N.D. -0.8 -0.6
phage 36hr PHYTO8 MOI 10 -0.8 N.D. N.D. -1.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. N.D. -0.6 -0.9
nophagecontrol 24hr Phyto Lib Only -0.6 N.D. N.D. -1.0 -0.5
phage 24hr PHYTO6 MOI 0.1 -0.2 N.D. N.D. -0.7 -1.0
phage 24hr PHYTO8 MOI 1 +0.3 N.D. N.D. -1.3 -1.1
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. N.D. -1.6 -0.6
phage 24hr PHYTO4 MOI 10 -1.8 N.D. N.D. -0.7 +0.6
phage 36hr PHYTO2 MOI 1 -0.7 N.D. N.D. -0.4 -0.8
carbon source Suberic (C) -0.7 N.D. N.D. +0.1 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 N.D. N.D. +0.3 -0.8
motility outer cut, LB soft agar motility assay -0.5 N.D. N.D. -1.3 +0.3
phage 36hr PHYTO4 MOI 1 -1.7 N.D. N.D. +0.0 +0.3
phage 36hr PHYTO9 MOI 1 -0.9 N.D. N.D. -1.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. N.D. -1.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.2 N.D. N.D. +0.4 -0.6
phage 36hr PHYTO3 MOI 1 -1.1 N.D. N.D. +0.5 -0.6
phage 36hr PHYTO1 MOI 10 -0.5 N.D. N.D. +0.7 -0.8
phage 36hr PHYTO4 MOI 0.1 -1.3 N.D. N.D. +0.1 +0.6
carbon source adipate (C) -1.4 N.D. N.D. +1.1 -0.0
phage P. phyto PHYTO2 MOI 1 +0.5 N.D. N.D. +1.5 -1.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.3 N.D. N.D. -0.6 +1.1
carbon source Malonic (C) +0.2 N.D. N.D. +0.4 +1.8
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BPHYT_RS05445
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