Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS05380	BPHYT_RS05385	BPHYT_RS05390	BPHYT_RS05395	BPHYT_RS05400
nitrogen source	L-Lysine (N)	N.D.	-0.4	-1.4	-1.3	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	+0.4	+0.3	-3.2	N.D.
carbon source	D-Glucose (C)	N.D.	-0.1	-1.1	-1.2	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	-0.9	-0.9	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	+0.3	-1.5	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.3	-1.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	-0.4	-0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	+0.6	-1.1	N.D.
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.6	+0.5	-1.7	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.5	+0.2	-1.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.1	+0.7	-1.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.3	+1.0	-1.2	N.D.
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	+0.4	+0.6	-1.2	N.D.
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.4	+0.8	-0.6	N.D.
stress	Thallium(I) acetate 0.01 mg/ml	N.D.	+0.3	-0.4	+1.1	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	-0.5	+0.4	+1.1	N.D.
motility	inner cut, LB soft agar motility assay	N.D.	-0.3	+0.8	+0.7	N.D.
stress	Paraquat dichloride 0.032 mg/ml	N.D.	-0.1	+0.2	+1.4	N.D.
phage	36hr PHYTO3 MOI 1	N.D.	-0.1	+0.9	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.3	+0.9	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	+1.2	+0.4	N.D.
temperature	LB, 23C	N.D.	+0.3	+0.6	+0.9	N.D.
carbon source	Putrescine (C)	N.D.	+0.2	+0.5	+1.2	N.D.
carbon source	D-Galacturonic Acid (C)	N.D.	+0.2	+0.5	+1.2	N.D.
phage	24hr PHYTO6 MOI 1	N.D.	+0.6	+0.4	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+2.4	+0.0	-0.3	N.D.
phage	36hr PHYTO2 MOI 1	N.D.	+0.8	+0.7	+0.9	N.D.
phage	36hr PHYTO2 MOI 1	N.D.	+0.9	+0.9	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.9	+1.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+0.5	+2.1	N.D.