Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS05305 and BPHYT_RS05310 are separated by 243 nucleotidesBPHYT_RS05310 and BPHYT_RS05315 are separated by 117 nucleotidesBPHYT_RS05315 and BPHYT_RS05320 are separated by 48 nucleotidesBPHYT_RS05320 and BPHYT_RS05325 are separated by 87 nucleotides BPHYT_RS05305: BPHYT_RS05305 - LysR family transcriptional regulator, at 1,221,796 to 1,222,737 _RS05305 BPHYT_RS05310: BPHYT_RS05310 - LysR family transcriptional regulator, at 1,222,981 to 1,223,898 _RS05310 BPHYT_RS05315: BPHYT_RS05315 - hydrolase, at 1,224,016 to 1,225,179 _RS05315 BPHYT_RS05320: BPHYT_RS05320 - beta-lactamase, at 1,225,228 to 1,226,019 _RS05320 BPHYT_RS05325: BPHYT_RS05325 - amidohydrolase, at 1,226,107 to 1,226,526 _RS05325
Group Condition BPHYT_RS05305 BPHYT_RS05310 BPHYT_RS05315 BPHYT_RS05320 BPHYT_RS05325
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.0 -0.2 -3.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.2 -0.3 -2.7 -0.5
nitrogen source L-Serine (N) N.D. -0.2 -0.5 -2.4 -0.0
nitrogen source L-Citrulline (N) N.D. +0.2 -0.1 -2.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.0 -0.0 -3.3 +0.8
nitrogen source Putrescine (N) N.D. -0.3 -0.0 -2.2 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 -0.1 -1.8 +0.0
motility inner cut, LB soft agar motility assay N.D. -0.0 -0.7 -1.6 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.4 +0.4 -2.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 +0.3 -2.6 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. +0.2 +0.3 -1.0 -1.3
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.4 +0.7 -3.1 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 +0.5 -1.0 -0.9
vitamin With vitamins t2 N.D. -0.1 +0.3 -1.9 +0.4
nophagecontrol 24hr Phyto Lib Only N.D. -0.5 -1.2 +0.6 +0.1
phage 24hr PHYTO10 MOI 10 N.D. -1.0 -1.0 +1.2 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.0 -1.3 +1.6 -0.8
phage 24hr PHYTO2 MOI 1 N.D. -0.4 -1.0 +0.6 +0.5
phage 36hr PHYTO9 MOI 0.1 N.D. -0.2 -1.2 +0.8 +0.4
phage 36hr PHYTO10 MOI 10 N.D. -0.1 -1.5 +0.8 +0.6
phage 36hr PHYTO11 MOI 0.1 N.D. -0.3 -0.4 +1.2 -0.6
phage 36hr PHYTO6 MOI 0.1 N.D. -0.2 -0.9 +1.2 -0.0
phage 24hr PHYTO6 MOI 1 N.D. -0.2 -1.3 +1.5 +0.0
phage 36hr PHYTO7 MOI 1 N.D. -0.3 -0.8 +1.5 -0.2
phage 24hr PHYTO2 MOI 0.1 N.D. +0.0 -1.2 +1.1 +0.3
carbon source Malonic (C) N.D. +0.5 +0.1 -1.2 +1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.1 -0.5 +1.6 -0.6
phage 36hr PHYTO4 MOI 1 N.D. -0.1 -1.0 +1.5 +0.1
phage 24hr PHYTO4 MOI 0.1 N.D. -0.3 -0.7 +1.4 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.4 +0.7 -0.5 +0.9
remove
BPHYT_RS05305
plot		 remove
BPHYT_RS05310
plot		 remove
BPHYT_RS05315		 remove
BPHYT_RS05320
plot		 remove
BPHYT_RS05325
plot