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Protein
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Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS05150 and BPHYT_RS05155 are separated by 199 nucleotides
BPHYT_RS05155 and BPHYT_RS05160 are separated by 222 nucleotides
BPHYT_RS05160 and BPHYT_RS05165 are separated by 103 nucleotides
BPHYT_RS05165 and BPHYT_RS05170 are separated by 14 nucleotides
BPHYT_RS05150: BPHYT_RS05150 - methionine aminopeptidase, at 1,188,161 to 1,188,946
_RS05150
BPHYT_RS05155: BPHYT_RS05155 - acetyltransferase GCN5, at 1,189,146 to 1,189,679
_RS05155
BPHYT_RS05160: BPHYT_RS05160 - septum site-determining protein MinC, at 1,189,902 to 1,190,756
_RS05160
BPHYT_RS05165: BPHYT_RS05165 - cell division inhibitor MinD, at 1,190,860 to 1,191,675
_RS05165
BPHYT_RS05170: BPHYT_RS05170 - cell division topological specificity factor, at 1,191,690 to 1,191,944
_RS05170
Group
Condition
BPHYT
_RS05150
BPHYT
_RS05155
BPHYT
_RS05160
BPHYT
_RS05165
BPHYT
_RS05170
in planta
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
+0.1
-5.0
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
+0.1
-4.3
N.D.
N.D.
N.D.
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-3.2
N.D.
N.D.
N.D.
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.0
-2.6
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
-1.9
N.D.
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
+0.3
-2.2
N.D.
N.D.
N.D.
nophagecontrol
36hr Phyto Lib only
-0.6
+1.8
N.D.
N.D.
N.D.
phage
36hr PHYTO1 MOI 10
-0.5
+1.7
N.D.
N.D.
N.D.
phage
36hr PHYTO2 MOI 1
-0.7
+1.9
N.D.
N.D.
N.D.
phage
36hr PHYTO10 MOI 1
-0.6
+1.8
N.D.
N.D.
N.D.
phage
24hr PHYTO11 MOI 1
-0.5
+1.7
N.D.
N.D.
N.D.
phage
36hr PHYTO6 MOI 0.1
-0.5
+1.8
N.D.
N.D.
N.D.
phage
36hr PHYTO4 MOI 1
-0.6
+1.9
N.D.
N.D.
N.D.
phage
24hr PHYTO11 MOI 0.1
-0.5
+1.8
N.D.
N.D.
N.D.
phage
36hr PHYTO11 MOI 1
-0.5
+1.9
N.D.
N.D.
N.D.
nophagecontrol
36hr Phyto Lib only
-0.6
+2.0
N.D.
N.D.
N.D.
phage
24hr PHYTO4 MOI 0.1
-0.5
+2.0
N.D.
N.D.
N.D.
phage
36hr PHYTO3 MOI 1
-0.4
+1.9
N.D.
N.D.
N.D.
nophagecontrol
24hr Phyto Lib Only
-0.4
+1.9
N.D.
N.D.
N.D.
phage
24hr PHYTO MOI 0.1
-0.4
+2.0
N.D.
N.D.
N.D.
nophagecontrol
24hr Phyto Lib Only
-0.4
+1.9
N.D.
N.D.
N.D.
phage
24hr PHYTO1 MOI 10
-0.3
+2.0
N.D.
N.D.
N.D.
phage
24hr PHYTO3 MOI 1
-0.4
+2.1
N.D.
N.D.
N.D.
phage
36hr PHYTO2 MOI 1
-0.2
+2.0
N.D.
N.D.
N.D.
phage
24hr PHYTO7 MOI 1
-0.3
+2.1
N.D.
N.D.
N.D.
phage
36hr PHYTO8 MOI 10
-0.4
+2.2
N.D.
N.D.
N.D.
phage
24hr PHYTO6 MOI 1
-0.2
+2.1
N.D.
N.D.
N.D.
phage
36hr PHYTO3 MOI 1
-0.0
+2.4
N.D.
N.D.
N.D.
phage
24hr PHYTO3 MOI 10
-0.2
+2.7
N.D.
N.D.
N.D.
phage
24hr PHYTO3 MOI 10
+0.0
+2.7
N.D.
N.D.
N.D.
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