Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS05115	BPHYT_RS05120	BPHYT_RS05125	BPHYT_RS05130	BPHYT_RS05135
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-1.1	-1.7	-1.9	-0.5	-1.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.0	-1.2	-1.1	+0.7	-0.0
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.5	-0.8	-0.1	-0.3
phage	24hr PHYTO3 MOI 10	-0.3	+0.3	-1.0	+0.5	-1.3
phage	36hr PHYTO1 MOI 1	-0.0	-0.3	-0.6	+0.0	-0.9
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	-1.5	-0.1	+0.2	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.3	-0.4	-0.8	+0.1
motility	inner cut, LB soft agar motility assay	-0.4	+0.4	-0.4	-1.0	+0.1
nophagecontrol	36hr Phyto Lib only	-0.4	-0.0	+0.1	+0.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.0	-0.0	-1.1	+0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	-0.4	+0.4	-0.2	+0.5
phage	36hr PHYTO4 MOI 1	+0.2	-0.0	+0.2	+0.6	-0.7
phage	36hr PHYTO10 MOI 10	+0.3	+0.3	-0.1	+0.5	-0.8
phage	36hr PHYTO10 MOI 1	-0.1	+0.2	-0.1	+0.8	-0.7
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.1	+0.3	+0.1	-0.7	+0.5
carbon source	Phenylacetic 5 mM (C)	-0.5	-0.2	+0.0	+0.3	+0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.5	-0.1	+0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.1	-0.0	-0.5	+0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	+0.3	-0.6	+0.8
tn7 efficiency	Outgrowth after Tn7 transformation	+0.3	+0.0	+0.4	-0.6	+0.4
phage	24hr PHYTO10 MOI 1	+0.4	+0.3	+0.3	+0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.0	-0.2	+0.9	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.2	+0.5	-0.2	+0.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.2	-0.0	+0.8	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	+0.4	+0.0	+1.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.1	-0.1	+1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.1	-0.2	+1.2	+0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	+0.1	+0.5	+0.8	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	+0.2	+0.2	+0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.4	+0.1	+1.1	+0.4