Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS05040	BPHYT_RS05045	BPHYT_RS05050	BPHYT_RS05055	BPHYT_RS05060
vitamin	With vitamins t2	-3.4	-0.4	+0.0	+0.1	-0.2
nutrient	Min media with glucose	-3.3	-0.2	-0.1	+0.0	-0.1
vitamin	No vitamins t2	-3.6	-0.1	+0.2	+0.1	-0.2
carbon source	D-Glucose 20 mM (C)	-3.2	+0.2	-0.2	-0.1	-0.2
nutrient	L-Serine	-2.9	+0.2	-0.2	+0.1	-0.3
carbon source	D-Glucose (C)	-3.4	+0.1	+0.2	-0.1	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-3.0	+0.7	-0.3	-0.4	+0.0
nitrogen source	L-Asparagine (N)	-2.8	-0.3	-0.0	+0.1	+0.1
carbon source	D-Glucose 20 mM (C)	-2.4	+0.1	-0.4	-0.2	-0.1
nutrient	L-Serine	-2.4	-0.1	-0.3	+0.2	-0.2
nutrient	Min media with glucose	-2.9	+0.1	+0.1	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.6	-0.3	-0.2	-0.5	-0.1
nutrient	casaminos	-2.3	-0.1	+0.0	+0.1	-0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-2.6	+0.4	+0.4	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.1	-0.0	+0.1	-0.3	-0.1
carbon source	D-Glucose (C)	-1.8	+0.1	-0.2	-0.3	-0.2
vitamin	No vitamins t1	-2.0	-0.2	+0.2	-0.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.6	-0.3	-0.1	+0.1	-0.3
nitrogen source	Ammonium chloride (N)	-1.9	+0.1	-0.2	-0.3	+0.1
carbon source	D-Glucose (C)	-2.4	+0.3	+0.1	-0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.6	-0.2	+0.1	-0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-1.8	-0.0	+0.4	-0.3	-0.3
nutrient	L-Histidine	-1.8	+0.1	-0.1	+0.1	-0.2
carbon source	D-Glucose (C)	-2.1	+0.0	+0.1	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	+0.3	+0.2	-0.4	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.5	-0.2	-0.3	+0.0	+0.7
nitrogen source	L-Lysine (N)	-1.7	+0.1	+0.6	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-2.0	+0.1	+0.5	+0.3	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.6	+0.1	+0.2	+0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.2	-0.8	+0.8	+0.2