Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05010 and BPHYT_RS05015 overlap by 23 nucleotidesBPHYT_RS05015 and BPHYT_RS05020 are separated by 180 nucleotidesBPHYT_RS05020 and BPHYT_RS05025 are separated by 545 nucleotidesBPHYT_RS05025 and BPHYT_RS05030 are separated by 199 nucleotides BPHYT_RS05010: BPHYT_RS05010 - RpiR family transcriptional regulator, at 1,153,637 to 1,155,553 _RS05010 BPHYT_RS05015: BPHYT_RS05015 - 6-phosphogluconolactonase, at 1,155,531 to 1,156,235 _RS05015 BPHYT_RS05020: BPHYT_RS05020 - glucose-6-phosphate 1-dehydrogenase, at 1,156,416 to 1,157,879 _RS05020 BPHYT_RS05025: BPHYT_RS05025 - sugar ABC transporter substrate-binding protein, at 1,158,425 to 1,159,672 _RS05025 BPHYT_RS05030: BPHYT_RS05030 - sugar ABC transporter permease, at 1,159,872 to 1,160,810 _RS05030
Group Condition BPHYT_RS05010 BPHYT_RS05015 BPHYT_RS05020 BPHYT_RS05025 BPHYT_RS05030
vitamin No vitamins t2 -4.4 N.D. -4.8 -4.5 -5.4
vitamin With vitamins t2 -4.3 N.D. -3.8 -4.9 -5.3
nitrogen source Ammonium chloride (N) -4.7 N.D. -3.3 -3.1 -5.8
carbon source D-Glucose (C) -5.0 N.D. -2.8 -1.8 -7.3
carbon source D-Glucose (C) -4.2 N.D. -3.6 -3.5 -4.0
carbon source D-Glucose (C) -4.6 N.D. -3.5 -4.5 -2.6
nutrient Min media with glucose -5.2 N.D. -3.7 -2.1 -3.2
nitrogen source L-Citrulline (N) -5.3 N.D. -3.4 -2.7 -2.2
carbon source D-Glucose (C) -3.8 N.D. -2.6 -2.5 -4.6
nutrient Min media with glucose -4.2 N.D. -3.5 -2.6 -2.5
nutrient L-Serine -5.3 N.D. -2.6 -2.0 -2.5
nutrient L-Serine -4.7 N.D. -2.8 -2.7 -2.0
carbon source D-Glucose 20 mM (C) -4.6 N.D. -2.3 -2.5 -2.5
carbon source D-Glucose (C) -4.6 N.D. -2.3 -2.3 -2.6
vitamin With vitamins t1 -4.5 N.D. -2.9 -2.4 -1.2
vitamin No vitamins t1 -3.7 N.D. -2.3 -2.5 -2.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -4.3 N.D. -2.2 -2.4 -1.9
nitrogen source L-Asparagine (N) -3.2 N.D. -3.8 -2.0 -1.6
carbon source D-Glucose 20 mM (C) -3.7 N.D. -2.7 -2.2 -1.9
carbon source D-Glucose (C) -2.6 N.D. -2.3 -3.1 -2.1
carbon source D-Glucose (C) -4.1 N.D. -2.2 -1.5 -2.0
carbon source D-Glucose (C) -3.0 N.D. -1.8 -1.7 -3.2
nitrogen source Putrescine (N) -3.3 N.D. -2.8 -1.1 -1.6
nitrogen source L-Glutamine (N) -2.7 N.D. -1.8 -1.3 -2.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.3 N.D. -1.6 -1.4 -2.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.0 N.D. -1.5 -2.4 -1.4
nutrient L-Histidine -3.2 N.D. -2.0 -1.5 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 N.D. -1.2 -2.1 -1.6
carbon source D-Glucosamine Hydrochloride (C) -5.5 N.D. -1.9 +0.1 +0.2
carbon source D-Mannose (C) +2.3 N.D. -3.4 -2.3 -3.0
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