Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS05000 and BPHYT_RS05005 are separated by 116 nucleotidesBPHYT_RS05005 and BPHYT_RS05010 are separated by 161 nucleotidesBPHYT_RS05010 and BPHYT_RS05015 overlap by 23 nucleotidesBPHYT_RS05015 and BPHYT_RS05020 are separated by 180 nucleotides BPHYT_RS05000: BPHYT_RS05000 - nucleotide pyrophosphatase, at 1,151,332 to 1,153,005 _RS05000 BPHYT_RS05005: BPHYT_RS05005 - hypothetical protein, at 1,153,122 to 1,153,475 _RS05005 BPHYT_RS05010: BPHYT_RS05010 - RpiR family transcriptional regulator, at 1,153,637 to 1,155,553 _RS05010 BPHYT_RS05015: BPHYT_RS05015 - 6-phosphogluconolactonase, at 1,155,531 to 1,156,235 _RS05015 BPHYT_RS05020: BPHYT_RS05020 - glucose-6-phosphate 1-dehydrogenase, at 1,156,416 to 1,157,879 _RS05020
Group Condition BPHYT_RS05000 BPHYT_RS05005 BPHYT_RS05010 BPHYT_RS05015 BPHYT_RS05020
vitamin No vitamins t2 +0.1 -0.4 -4.4 N.D. -4.8
nutrient Min media with glucose -0.0 +0.2 -5.2 N.D. -3.7
nutrient L-Serine -0.1 -1.0 -4.7 N.D. -2.8
nitrogen source L-Citrulline (N) -0.0 +0.2 -5.3 N.D. -3.4
nitrogen source Ammonium chloride (N) -0.1 -0.3 -4.7 N.D. -3.3
carbon source D-Glucose (C) +0.0 -0.1 -4.6 N.D. -3.5
vitamin With vitamins t1 +0.0 -0.4 -4.5 N.D. -2.9
carbon source D-Glucose (C) +0.0 +0.0 -5.0 N.D. -2.8
nutrient L-Serine +0.0 +0.2 -5.3 N.D. -2.6
carbon source D-Glucose (C) +0.2 -0.1 -4.2 N.D. -3.6
vitamin With vitamins t2 +0.1 +0.3 -4.3 N.D. -3.8
carbon source D-Glucose (C) -0.0 -0.5 -4.6 N.D. -2.3
nutrient Min media with glucose +0.0 +0.3 -4.2 N.D. -3.5
nitrogen source L-Asparagine (N) +0.1 -0.3 -3.2 N.D. -3.8
carbon source D-Glucose (C) -0.5 -0.4 -4.1 N.D. -2.2
carbon source D-Glucose 20 mM (C) +0.2 -0.7 -3.7 N.D. -2.7
carbon source D-Glucosamine Hydrochloride (C) +0.3 +0.3 -5.5 N.D. -1.9
nitrogen source Putrescine (N) +0.3 -0.7 -3.3 N.D. -2.8
carbon source D-Glucose (C) -0.1 +0.0 -3.8 N.D. -2.6
vitamin No vitamins t1 +0.2 -0.6 -3.7 N.D. -2.3
carbon source D-Glucose 20 mM (C) +0.1 +0.5 -4.6 N.D. -2.3
nitrogen source L-Lysine (N) +0.1 +0.6 -4.6 N.D. -2.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.6 +0.3 -4.3 N.D. -2.2
nutrient casaminos +0.0 +0.0 -3.6 N.D. -1.9
nitrogen source L-Glutamine (N) +0.3 -0.7 -2.7 N.D. -1.8
nutrient L-Histidine +0.1 +0.1 -3.2 N.D. -2.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 -0.0 -3.2 N.D. -1.8
carbon source D-Glucose (C) +0.1 +0.4 -2.6 N.D. -2.3
carbon source NAG (C) +0.1 -0.3 +1.0 N.D. -4.4
carbon source D-Mannose (C) -0.0 +0.2 +2.3 N.D. -3.4
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