Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04960 and BPHYT_RS04965 are separated by 348 nucleotidesBPHYT_RS04965 and BPHYT_RS04970 are separated by 226 nucleotidesBPHYT_RS04970 and BPHYT_RS04975 are separated by 349 nucleotidesBPHYT_RS04975 and BPHYT_RS04980 are separated by 86 nucleotides BPHYT_RS04960: BPHYT_RS04960 - membrane protein, at 1,142,105 to 1,142,758 _RS04960 BPHYT_RS04965: BPHYT_RS04965 - ATP-binding protein, at 1,143,107 to 1,144,195 _RS04965 BPHYT_RS04970: BPHYT_RS04970 - superoxide dismutase, at 1,144,422 to 1,144,955 _RS04970 BPHYT_RS04975: BPHYT_RS04975 - deoxycytidine triphosphate deaminase, at 1,145,305 to 1,145,874 _RS04975 BPHYT_RS04980: BPHYT_RS04980 - lysine decarboxylase, at 1,145,961 to 1,148,246 _RS04980
Group Condition BPHYT_RS04960 BPHYT_RS04965 BPHYT_RS04970 BPHYT_RS04975 BPHYT_RS04980
nitrogen source L-Glutamine (N) +0.1 -6.5 -0.4 N.D. N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.2 -6.4 -0.6 N.D. N.D.
nitrogen source L-Alanine (N) +0.3 -7.0 -0.0 N.D. N.D.
nitrogen source L-Asparagine (N) +0.1 -6.3 -0.4 N.D. N.D.
nitrogen source L-Lysine (N) +0.2 -6.3 -0.2 N.D. N.D.
carbon source Dodecandioic (C) -0.1 -5.8 -0.3 N.D. N.D.
carbon source Sebacic (C) -0.1 -5.5 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -4.2 -0.7 N.D. N.D.
nitrogen source Ammonium chloride (N) +0.5 -6.3 -0.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.2 -5.4 -0.3 N.D. N.D.
nitrogen source D-Alanine (N) +0.0 -6.1 +0.3 N.D. N.D.
stress Bacitracin 0.25 mg/ml +0.2 -5.3 -0.4 N.D. N.D.
carbon source propionate (C) -0.1 -5.6 +0.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -5.0 -0.5 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.2 -4.6 -1.1 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.4 -5.0 +0.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -4.8 +0.1 N.D. N.D.
nitrogen source Carnitine Hydrochloride (N) +0.2 -5.7 +0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -4.6 -0.4 N.D. N.D.
nitrogen source Uridine (N) +0.0 -5.2 -0.0 N.D. N.D.
nutrient L-Histidine -0.2 -4.6 -0.4 N.D. N.D.
carbon source succinate (C) -0.1 -4.9 -0.0 N.D. N.D.
nitrogen source L-Citrulline (N) -0.0 -5.3 +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -4.0 -0.7 N.D. N.D.
carbon source D-Sorbitol (C) -0.2 -4.6 +0.1 N.D. N.D.
carbon source Sebacic (C) +0.1 -4.9 +0.1 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.4 -4.4 -0.5 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.4 -4.0 -0.9 N.D. N.D.
carbon source Azelaic (C) -0.3 -4.5 +0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 -3.7 -0.5 N.D. N.D.
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