Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04915 and BPHYT_RS04920 are separated by 192 nucleotidesBPHYT_RS04920 and BPHYT_RS04925 are separated by 34 nucleotidesBPHYT_RS04925 and BPHYT_RS04930 are separated by 202 nucleotidesBPHYT_RS04930 and BPHYT_RS04935 are separated by 4 nucleotides BPHYT_RS04915: BPHYT_RS04915 - cobyrinic acid a,c-diamide synthase, at 1,129,621 to 1,130,259 _RS04915 BPHYT_RS04920: BPHYT_RS04920 - aspartate 1-decarboxylase, at 1,130,452 to 1,130,838 _RS04920 BPHYT_RS04925: BPHYT_RS04925 - pantothenate synthetase, at 1,130,873 to 1,131,706 _RS04925 BPHYT_RS04930: BPHYT_RS04930 - segregation and condensation protein A, at 1,131,909 to 1,132,784 _RS04930 BPHYT_RS04935: BPHYT_RS04935 - hypothetical protein, at 1,132,789 to 1,132,974 _RS04935
Group Condition BPHYT_RS04915 BPHYT_RS04920 BPHYT_RS04925 BPHYT_RS04930 BPHYT_RS04935
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.2 -4.8 N.D. N.D. N.D.
carbon source Sebacic (C) -0.4 -3.0 N.D. N.D. N.D.
nitrogen source L-Proline (N) +0.0 -3.4 N.D. N.D. N.D.
carbon source adipate (C) -0.1 -2.6 N.D. N.D. N.D.
nitrogen source Ammonium chloride (N) +0.0 -2.5 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.0 -2.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -2.1 N.D. N.D. N.D.
carbon source D-Glucose (C) -0.3 -2.0 N.D. N.D. N.D.
carbon source L-Phenylalanine (C) +0.2 -2.4 N.D. N.D. N.D.
vitamin With vitamins t2 -0.4 -1.7 N.D. N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.6 -1.5 N.D. N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.2 -0.9 N.D. N.D. N.D.
carbon source L-Arginine (C) -0.3 -1.7 N.D. N.D. N.D.
nutrient L-Histidine -0.1 -1.9 N.D. N.D. N.D.
carbon source Dodecandioic (C) +0.2 -2.1 N.D. N.D. N.D.
nutrient casaminos -0.4 -1.5 N.D. N.D. N.D.
nitrogen source L-Citrulline (N) -0.1 -1.7 N.D. N.D. N.D.
carbon source Malonic (C) -0.3 -1.4 N.D. N.D. N.D.
nutrient Min media with glucose -0.2 -1.6 N.D. N.D. N.D.
carbon source D-Galactose (C) -0.1 -1.6 N.D. N.D. N.D.
carbon source D,L-Lactate (C) -0.0 -1.7 N.D. N.D. N.D.
carbon source Phenylacetic 5 mM (C) +0.2 -1.8 N.D. N.D. N.D.
carbon source D-Glucose 20 mM (C) -0.5 -1.1 N.D. N.D. N.D.
carbon source L-Rhamnose (C) +0.2 -1.8 N.D. N.D. N.D.
nitrogen source L-Glutamine (N) +0.3 -1.9 N.D. N.D. N.D.
phage 24hr PHYTO9 MOI 10 +0.1 -1.5 N.D. N.D. N.D.
carbon source Xylitol (C) +0.2 -1.6 N.D. N.D. N.D.
nitrogen source L-Phenylalanine (N) +0.4 -1.8 N.D. N.D. N.D.
carbon source Malonic (C) +0.3 -1.5 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.3 +1.3 N.D. N.D. N.D.
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BPHYT_RS04915
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