Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS04905 and BPHYT_RS04910 are separated by 207 nucleotidesBPHYT_RS04910 and BPHYT_RS04915 are separated by 210 nucleotidesBPHYT_RS04915 and BPHYT_RS04920 are separated by 192 nucleotidesBPHYT_RS04920 and BPHYT_RS04925 are separated by 34 nucleotides BPHYT_RS04905: BPHYT_RS04905 - quinol oxidase, at 1,128,367 to 1,128,783 _RS04905 BPHYT_RS04910: BPHYT_RS04910 - phenylacetic acid degradation protein, at 1,128,991 to 1,129,410 _RS04910 BPHYT_RS04915: BPHYT_RS04915 - cobyrinic acid a,c-diamide synthase, at 1,129,621 to 1,130,259 _RS04915 BPHYT_RS04920: BPHYT_RS04920 - aspartate 1-decarboxylase, at 1,130,452 to 1,130,838 _RS04920 BPHYT_RS04925: BPHYT_RS04925 - pantothenate synthetase, at 1,130,873 to 1,131,706 _RS04925
Group Condition BPHYT_RS04905 BPHYT_RS04910 BPHYT_RS04915 BPHYT_RS04920 BPHYT_RS04925
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +0.3 -0.2 -4.8 N.D.
phage 36hr PHYTO2 MOI 1 -0.1 -4.2 -0.2 +0.4 N.D.
phage 36hr PHYTO4 MOI 1 -0.1 -3.8 -0.2 +0.5 N.D.
carbon source Sebacic (C) +0.4 -0.4 -0.4 -3.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.7 -0.2 -2.1 N.D.
vitamin With vitamins t2 +0.0 -0.9 -0.4 -1.7 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.0 -0.7 +0.0 -2.3 N.D.
nitrogen source L-Proline (N) +0.1 +0.4 +0.0 -3.4 N.D.
phage P. phyto PHYTO2 MOI 1 +0.6 -3.5 -0.3 +0.6 N.D.
carbon source Dodecandioic (C) +0.1 -0.6 +0.2 -2.1 N.D.
supernatant control Vogels_fungal_media 0.1X +0.4 -2.5 +0.2 -0.6 N.D.
nitrogen source Ammonium chloride (N) -0.7 +0.8 +0.0 -2.5 N.D.
carbon source adipate (C) +0.9 -0.7 -0.1 -2.6 N.D.
carbon source D-Glucose (C) +0.3 -0.2 -0.3 -2.0 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.7 -2.1 -0.8 +0.3 N.D.
phage P. phyto PHYTO2 MOI 1 +0.7 -2.4 -0.2 +0.1 N.D.
nitrogen source L-Phenylalanine (N) +0.1 -0.5 +0.4 -1.8 N.D.
carbon source L-Phenylalanine (C) +0.6 -0.0 +0.2 -2.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 +0.3 -1.2 -0.9 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.9 +0.3 -0.6 -1.5 N.D.
phage 24hr PHYTO1 MOI 1 +0.5 -1.5 -0.4 +0.6 N.D.
carbon source Malonic (C) +0.2 +0.7 -0.3 -1.4 N.D.
carbon source Phenylacetic 5 mM (C) +0.5 +0.6 +0.2 -1.8 N.D.
carbon source D-Galacturonic Acid (C) -0.6 +0.7 +0.4 -1.1 N.D.
phage 36hr PHYTO1 MOI 10 -0.2 -1.4 +0.2 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 -1.3 +0.2 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -0.8 -0.2 +1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.2 -0.4 +0.1 +1.3 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.4 +4.4 +0.0 +1.1 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.4 +4.1 +0.5 +1.1 N.D.
remove
BPHYT_RS04905
plot		 remove
BPHYT_RS04910
plot		 remove
BPHYT_RS04915		 remove
BPHYT_RS04920
plot		 remove
BPHYT_RS04925
plot